3. Update Package Data (if tests passed) #11
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| ### Overwrite FrEDI data with past data | |
| # on: | |
| # workflow_run: | |
| # workflows: ["Compile FrEDI Data"] | |
| name: 3. Update Package Data (if tests passed) | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| passed_tests: | |
| type: choice | |
| description: Did data pass tests? | |
| required: true | |
| options: | |
| - no | |
| - yes | |
| workflow_id: | |
| type: string | |
| description: Enter the run ID for the workflow from which to retrieve the main FrEDI Data | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| update_data: | |
| runs-on: ubuntu-latest | |
| name: Update Data | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Setup R package dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache: true | |
| cache-version: 1 | |
| packages: | | |
| any::tidyverse | |
| any::ggpubr | |
| any::openxlsx | |
| any::devtools | |
| any::admisc | |
| any::zoo | |
| # - name: Send test status | |
| # run: echo "${{ github.event.inputs.passed_tests }}" | |
| - name: Send input status | |
| run: | | |
| echo "$${{ github.ref_name }} ${{ inputs.passed_tests }} ${{ inputs.workflow_id }}" | |
| ### Download tmp_sysdata.rda from 1. Compile Main FrEDI Data run | |
| - name: Download all artifacts | |
| id: download-artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| # github-token: ${{ GITHUB_PAT }} | |
| run-id: ${{ inputs.workflow_id }} | |
| path: ./data | |
| - run: | | |
| pwd | |
| ls -R ./data/Data | |
| # github.event.inputs.passed_tests == 'true' | |
| # github.inputs.passed_tests == 'true' | |
| # cp data/tmp_sysdata.rda data/sysdata.rda | |
| # ${{ ( github.inputs.passed_tests == 'true' ) || ( github.inputs.passed_tests == 'yes' ) }} | |
| - name: Update Data | |
| if: | | |
| ${{ ( inputs.passed_tests == 'true' ) || | |
| ( inputs.passed_tests == 'yes' ) }} | |
| run: | | |
| rm ./data/sysdata.rda | |
| cp ./data/Data/tmp_sysdata.rda ./data/sysdata.rda | |
| rm ./data/Data/tmp_sysdata.rda | |
| # github.event.inputs.passed_tests == 'true' | |
| - name: Add SV Data to sysdata | |
| if: | | |
| ${{ ( inputs.passed_tests == 'true' ) || | |
| ( inputs.passed_tests == 'yes' ) }} | |
| run: | | |
| Rscript -e ' | |
| ### Libraries | |
| require(tidyverse) | |
| require(devtools) | |
| ###### Set Paths ###### | |
| ### Project path | |
| ### Data output path and file name | |
| projectDir <- "." | |
| dataDir <- projectDir |> file.path("data") | |
| svDir <- dataDir |> file.path("sv") | |
| ### Filenames | |
| dataFile <- "sysdata.rda" | |
| ###### 0. Local Function ###### | |
| projectDir |> devtools::load_all() | |
| ###### 1. Add SV Data to sysdata.rda ###### | |
| tmpData <- projectDir |> update_sysdata( | |
| dataPath = dataDir, | |
| mainFile = dataFile, | |
| sv = TRUE , | |
| svPath = svDir, | |
| svExt = "rda", | |
| save = TRUE , | |
| return = FALSE | |
| ) ### End update_sysdata | |
| ' | |
| - name: Commit results | |
| if: | | |
| ${{ ( inputs.passed_tests == 'true' ) || | |
| ( inputs.passed_tests == 'yes' ) }} | |
| run: | | |
| # Configure github | |
| git config --local core.autocrlf false | |
| git config --local user.email "${{ github.actor }}@users.noreply.github.com" | |
| git config --local user.name "${{ github.actor }}" | |
| # Navigate to the repository directory (optional, set the path below if needed) | |
| # cd /path/to/your/repo | |
| # Add data files | |
| git add ./data/*.rd* | |
| # Rebase files | |
| git pull origin ${{ github.head_ref }} --autostash --rebase -X ours | |
| # git commit -a -m "Updated sysdata and added SV data to sysdata" | |
| # git push | |
| # Check for staged changes | |
| if git diff --cached --quiet; then | |
| echo "No changes staged for commit." | |
| else | |
| echo "Some changes staged for commit." | |
| # Commit the changes | |
| commit_message="Auto-commit: Updated sysdata and added SV data to sysdata. Date: $(date '+%Y-%m-%d %H:%M:%S')" | |
| git commit -m "$commit_message" | |
| echo "Changes committed with message: '$commit_message'." | |
| git push | |
| fi |