Code

Minimizing depth algorithm #5

Code

Merged

necrolyte2 merged 35 commits intoVDBWRAIR:masterVDBWRAIR/subsamplebam:masterfrom averagehat:masteraveragehat/subsamplebam:masterCopy head branch name to clipboardMar 27, 2015

+1,076-40

Commits

Commits on Mar 19, 2015

• Initial commit

  

  michael.panciera

  committed
  de48d77

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Commits on Mar 20, 2015

• First working version of the algorithm.

  makeartandgames

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  ce5cb13

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Commits on Mar 24, 2015

• various fixes

  

  Panciera

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  1d687ff

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• ?

  

  Panciera

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  31c1af8

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• Fixed orphan bug.

  

  Panciera

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  8a04a24

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• Cleaned up files

  

  Panciera

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  5e8cad6

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• inline documentation, made orphans optional

  

  Panciera

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  0d209ed

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• fixed to only backtrack the maximum sequence length

  

  Panciera

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  fdfe9cd

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• Cleaned directory

  

  Panciera

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  477bff7

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• fixed minimizing bug

  

  Panciera

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  04e067a

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• cleaning

  

  Panciera

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  cc36628

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• python -m cProfile myscript.py

  

  Panciera

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  7bd1106

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Commits on Mar 25, 2015

• deleted files

  

  Panciera

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  3eb29f5

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Commits on Mar 26, 2015

• Test and refactoring

  

  Panciera

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  44b9e66

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• cleaning

  

  Panciera

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  647c799

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• Completed mindepth testing

  

  Panciera

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  9c69fd8

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• Created parallel.sh wrapper script

  

  Panciera

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  4af52d3

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• Added images back

  

  Panciera

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  8a62dc1

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• removed outputs folder, might host elsewhere

  

  Panciera

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  12c11e0

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• added more images

  

  Panciera

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  030e97a

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Commits on Mar 27, 2015

• Removed BioPython dependency

  

  Panciera

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  67e9e81

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• Cleaning to make pull request more clear

  

  Panciera

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  54921f8

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• Trying to fix travis build issues

  necrolyte2

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  7e1b8a1

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• cleaning

  

  Panciera

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  ce57af3

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• reorg

  

  Panciera

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  557d481

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• Merge branches 'master' and 'travis-fix'

  

  Panciera

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  85be93e

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• Fix StringIO import for python3

  

  Panciera

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  c037b81

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• "added badges for proof"

  

  Panciera

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  6b41e83

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• fixed xrange python3 compat problem

  

  Panciera

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  1b7a10a

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• using past.builtins with future package for py3

  

  Panciera

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  c34d8be

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• clean

  

  Panciera

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  14aa52c

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• More py3 fixes

  

  Panciera

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  2b979a9

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• Cleaning

  

  Panciera

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  c0654c5

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• py2.6 doesn't allow .decode keyword argument

  

  Panciera

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  74b1a48

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• removed cover folder

  

  Panciera

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  11ce21a

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