Adjust pipeline to grab coverage data

.github/workflows/ci.yml

@@ -25,8 +25,10 @@ jobs:
           - name: Install dependencies
             run: pip install -r requirements.txt
 
-          - name: Run pytest with coverage
-            run: pytest --cov=synthlung
+          - name: Install tox
+            run: pip install tox
+          - name: Run tox
+            run: tox -e py
 
           - name: SonarCloud Scan
             uses: SonarSource/sonarcloud-github-action@master

sonar-project.properties

@@ -1,6 +1,7 @@
 sonar.projectKey=VemundFredriksen_SynthLung
 sonar.organization=vemundfredriksen
 
+sonar.python.coverage.reportPaths=coverage.xml
 # This is the name and version displayed in the SonarCloud UI.
 #sonar.projectName=SynthLung
 #sonar.projectVersion=1.0

tox.ini

@@ -0,0 +1,11 @@
+[tox]
+envlist = py39
+skipsdist = True
+
+[testenv]
+deps =
+    pytest
+    pytest-cov
+commands = pytest --cov=my_project --cov-report=xml --cov-config=tox.ini --cov-branch
+
+[coverage:run]