Refactor pipeline generalization

[VemundFredriksen]

Pull Request

Description

Small adjustments to the Tumor Isolation Pipeline and the folderstructure of assets

• Generalize the TumorIsolation-transform so it can be used in Compose() without the need to temporarily store files on disk in between transforms
• Place formatted images directly into /assets/source/ rather than in specific dataset folder (/assets/source/msd/)
• Place seed images directly into /assets/seeds/ rather than in specific dataset folder (/assets/seeds/msd/)

Type of Change

• Bug Fix
• New Feature
• Documentation Update
• Code Refactoring
• Other (please describe)

Checklist

• I have reviewed the code to ensure it follows the project's coding standards.
• I have tested the changes locally to verify that they work as expected.
• I have updated the documentation if necessary.

Screenshots

[sonarqubecloud]

SonarCloud Quality Gate failed.   

0 Bugs
0 Vulnerabilities
0 Security Hotspots
2 Code Smells

3.1% Coverage
0.0% Duplication

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