Change wave_init from task to metatask

Modify the corresponding scripts to run wave_init successfully On branch feature/gefs_v13_S2SW modified: ../fix/.gitignore modified: ../jobs/JGEFS_WAVE_INIT modified: ../parm/gefs.parm modified: ../parm/gefs_wave_init.parm modified: bin/wcoss2/common.sh modified: bin/wcoss2/wave_init.sh modified: py/GEFS_XML_For_Tasks.py modified: py/user_wcoss2.conf modified: ../sorc/link_gefs.sh Refs: NOAA-EMC#114
XianwuXue-NOAA · Mar 27, 2023 · 4cabec6 · 4cabec6
1 parent da8f851
commit 4cabec6
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Showing 9 changed files with 48 additions and 19 deletions.
diff --git a/fix/.gitignore b/fix/.gitignore
@@ -4,6 +4,7 @@ orog
 aer
 lut
 ugwd
+wave
 
 fix_*
 product
diff --git a/jobs/JGEFS_WAVE_INIT b/jobs/JGEFS_WAVE_INIT
@@ -62,18 +62,7 @@ export HOMEgefs=${HOMEgefs:-${PACKAGEROOT}/gefs.${gefs_ver}}
 export EXECgefs=${EXECgefs:-$HOMEgefs/exec}
 export PARMgefs=${PARMgefs:-$HOMEgefs/parm}
 export FIXwave=${FIXwave:-$HOMEgefs/fix/fix_wave}
-
-##############################################
-# Define COM directories
-##############################################
-# Have to include $COMPONENT in COM paths for downstream scripts
-ver=${ver:-$(echo ${gefs_ver}|cut -c1-5)}
-export COMIN=${COMIN:-$(compath.py $envir/com/$NET/${ver})/${RUN}.${PDY}/$cyc/wave}
-export COMOUT=${COMOUT:-$(compath.py -o $NET/${ver})/${RUN}.${PDY}/$cyc/wave}
-if [[ $SENDCOM = YES ]]; then
-  mkdir -p $COMOUT/rundata
-fi
-
+export CDUMP="gefs"
 #############################
 # Source relevant config files
 #############################
@@ -88,6 +77,24 @@ for config in $configs; do
     fi
 done
 
+##############################################
+# Define COM directories
+##############################################
+# Have to include $COMPONENT in COM paths for downstream scripts
+ver=${ver:-$(echo ${gefs_ver}|cut -c1-5)}
+export COMIN=${COMIN:-$(compath.py $envir/com/$NET/${ver})/${RUN}.${PDY}/$cyc}
+export COMOUT=${COMOUT:-$(compath.py -o $NET/${ver})/${RUN}.${PDY}/$cyc}
+
+if [[ ${NewCOM:-"YES"} == "YES" ]]; then
+  #export RUNMEM="gec00"
+  export mem=$(echo ${RUNMEM}|cut -c3-5)
+  export COMIN=${COMIN}/${mem}/wave
+  export COMOUT=${COMOUT}/${mem}/wave
+else
+  export COMIN=${COMIN}/wave
+  export COMOUT=${COMOUT}/wave
+fi
+
 export errchk=${errchk:-err_chk}
 if [[ $SENDCOM == "YES" ]]; then
     export wavelog=${COMOUT}/wave.log
@@ -100,7 +107,7 @@ env | sort
 
 #############################################################
 # Execute the script
-$HOMEwave/scripts/exwave_init.sh
+$HOMEwave/scripts/exgfs_wave_init.sh
 export err=$?
 if [[ $err == 0 ]]; then
     echo "$job completed normally!"

diff --git a/parm/gefs.parm b/parm/gefs.parm
@@ -137,6 +137,19 @@ export USHgefs=${USHgefs:-${HOMEgefs}/ush}
 #export FIXgefs=${FIXgefs:-${HOMEgefs}/fix/fix_gefs}
 export PARMgefs=${PARMgefs:-${HOMEgefs}/parm}
 
+export HOMEgfs=${HOMEgfs:-${HOMEgefs}}
+export PARMgfs=${HOMEgfs}/parm
+export EXPDIR=${PARMgfs}/config
+#export FIXgfs=${HOMEgfs}/fix
+#export USHgfs=${HOMEgfs}/ush
+#export UTILgfs=${HOMEgfs}/util
+#export EXECgfs=${HOMEgfs}/exec
+#export SCRgfs=${HOMEgfs}/scripts
+
+#export FIXcice=${HOMEgfs}/fix/cice
+#export FIXmom=${HOMEgfs}/fix/mom6
+#export FIXreg2grb2=${HOMEgfs}/fix/reg2grb2
+
 ####################################
 # CONVENIENT utility scripts and other environment parameters
 export NCP="/bin/cp -p"

diff --git a/parm/gefs_wave_init.parm b/parm/gefs_wave_init.parm
@@ -11,3 +11,5 @@
 
 # Step label
 export sigMODE=${sigMODE:-init}
+
+export CDUMP="gefs"
diff --git a/rocoto/bin/wcoss2/common.sh b/rocoto/bin/wcoss2/common.sh
@@ -44,8 +44,10 @@ if [[ $RocotoGen == 0 ]]; then
     # For prod data
     if [[ $CASEHR == "C48" ]]; then
       export COMPATH=${WORKDIR}/$envir/com/${NET}:/lfs/h2/emc/ens/noscrub/xianwu.xue/GEFS_v13/z_DATA/lfs_C96_C48_NOIAU_anal/h1/ops/prod/com/gfs
+      #export COMPATH=${WORKDIR}/$envir/com/${NET}:/lfs/h2/emc/ens/noscrub/xianwu.xue/GEFS_v13/z_DATA/lfs_C96_C48_NOIAU_anal_20230316/h1/ops/prod/com/gfs
     elif [[ $CASEHR == "C384" ]]; then
       export COMPATH=${WORKDIR}/$envir/com/${NET}:/lfs/h2/emc/ens/noscrub/xianwu.xue/GEFS_v13/z_DATA/lfs_C768_C384_NOIAU_anal/h1/ops/prod/com/gfs
+      #export COMPATH=${WORKDIR}/$envir/com/${NET}:/lfs/h2/emc/ens/noscrub/xianwu.xue/GEFS_v13/z_DATA/lfs_C768_C384_NOIAU_anal_20230223_updated_dev/h1/ops/prod/com/gfs
     else
       echo "Wrong CASEHR .."
       exit -1

diff --git a/rocoto/bin/wcoss2/wave_init.sh b/rocoto/bin/wcoss2/wave_init.sh
@@ -20,6 +20,9 @@ module load cray-pals/$cray_pals_ver
 
 module load prod_util/$prod_util_ver
 module load prod_envir/$prod_envir_ver
+
+module load netcdf/$netcdf_ver
+module load libjpeg/$libjpeg_ver
 module load cfp/$cfp_ver
 
 export USE_CFP=YES

diff --git a/rocoto/py/GEFS_XML_For_Tasks.py b/rocoto/py/GEFS_XML_For_Tasks.py
@@ -1473,6 +1473,7 @@ def get_metatask_names(taskname=""):
     metatask_names.append('prdgen_hr')
     metatask_names.append('prdgen_lr')
     # wave
+    metatask_names.append('wave_init')
     metatask_names.append('wave_prep')
     metatask_names.append('wave_post')
     metatask_names.append('wave_gempak')

diff --git a/rocoto/py/user_wcoss2.conf b/rocoto/py/user_wcoss2.conf
@@ -186,7 +186,7 @@ wave_init_nodes                 = 1
 wave_init_ppn                   = 6
 wave_init_tpp                   = 1
 wave_init_memory                = 20GB
-wave_init_join                  = &LOG_DIR;/@Y@m@d/gefs_wave_init_@H.@s
+wave_init_join                  = &LOG_DIR;/@Y@m@d/gefs_#member#_wave_init_@H.@s
 wave_init_queue                 = &CUE2RUN;
 ## wave_prep****************************************************
 wave_prep_walltime              = 00:10:00

diff --git a/sorc/link_gefs.sh b/sorc/link_gefs.sh
@@ -59,7 +59,7 @@ if [[ -d global-workflow.fd ]] ; then
 
   cd ${pwd}/../fix
 
-  for gw_dir in am aer lut orog chem ugwd; do
+  for gw_dir in am aer lut orog chem ugwd wave; do
     if [[ -d $gw_dir ]]; then
       rm -rf $gw_dir
     fi
@@ -164,17 +164,18 @@ if [[ -d global-workflow.fd ]] ; then
 fi
 
 # For wave
-if [[ 1 == 0 ]]; then
 echo $pwd
 cd $pwd
 if [[ -d global-workflow.fd ]]; then
-  lScripts="exwave_init.sh exwave_nawips.sh exwave_post_sbs.sh exwave_prep.sh exwave_stat.sh"
+  lScripts="exgfs_wave_init.sh exgfs_wave_nawips.sh exgfs_wave_post_gridded_sbs.sh exgfs_wave_prep.sh exgfs_wave_prdgen_bulls.sh exgfs_wave_prdgen_gridded.sh" #exwave_stat.sh"
   for sFile in $lScripts; do
     $LINK ../sorc/global-workflow.fd/scripts/$sFile ../scripts/
   done
 
-  lUsh="wave_ens_bull.sh wave_ens_stat.sh wave_grib2_sbs.sh wave_grid_interp_sbs.sh wave_grid_moddef.sh wave_outp_spec.sh wave_prnc_cur.sh wave_prnc_ice.sh wave_tar.sh"
+  lUsh=`ls ../sorc/global-workflow.fd/ush/wave_*` #"wave_ens_bull.sh wave_ens_stat.sh wave_grib2_sbs.sh wave_grid_interp_sbs.sh wave_grid_moddef.sh wave_outp_spec.sh wave_prnc_cur.sh wave_prnc_ice.sh wave_tar.sh"
   for sFile in $lUsh; do
+    sFile=$(basename ${sFile})
+    echo $sFile
     $LINK ../sorc/global-workflow.fd/ush/$sFile ../ush/
   done
 
@@ -187,7 +188,6 @@ if [[ -d global-workflow.fd ]]; then
     $LINK ${pwd}/global-workflow.fd/env ../
   fi
 fi
-fi
 
 # for CHEM
 if [[ -d global-workflow.fd ]]; then
-Original file line number
+Diff line change
@@ Expand Up / @@ -4,6 +4,7 @@ orog @@
     aer
     lut
     ugwd
+    wave
     fix_*
     product
Original file line number	Diff line number	Diff line change
Expand Up		@@ -11,3 +11,5 @@

		# Step label
		export sigMODE=${sigMODE:-init}

		export CDUMP="gefs"