2022 Lorne Proteins Computational Biology Workshops

Google Colab notebooks

• AlphaFold_Fab.ipynb: example of AlphaFold-Multimer (heterodimer, antibody)
• AlphaFold_Fab_peptide.ipynb: example of AlphaFold-Multimer (heterotrimer, antibody-peptide complex)
• AlphaFold_Kynu_homodimer.ipynb: example of AlphaFold-Multimer (homodimer, protein-protein complex)

AlphaFold-Multimer examples and Antibody analysis scripts

• ./multimer/
• Extract the average pLDDT scores of CDRs and provide Pymol commands for highlighting CDRs.

Contacts

• Yoochan Myung (ymyung at student.unimelb.edu.au)