Fix minor typo in help #23

	name: BactSeq CI

	on:
	push:
	branches:
	- main
	pull_request:

	env:
	NXF_ANSI_LOG: false
	CAPSULE_LOG: none

	jobs:
	test:
	name: Run pipeline with test data
	if: "${{ github.event_name != 'push' \|\| (github.event_name == 'push' && github.repository == 'adamd3/BactSeq') }}"
	runs-on: ubuntu-latest
	strategy:
	matrix:
	# Nextflow versions
	include:
	# Test pipeline minimum Nextflow version
	- NXF_VER: "21.10.3"
	NXF_EDGE: ""
	# Test latest edge release of Nextflow
	- NXF_VER: ""
	NXF_EDGE: "1"
	steps:
	- name: Check out pipeline code
	uses: actions/checkout@v2

	- name: Install Nextflow
	env:
	NXF_VER: ${{ matrix.NXF_VER }}
	# Uncomment only if the edge release is more recent than the latest stable release
	# See https://github.com/nextflow-io/nextflow/issues/2467
	# NXF_EDGE: ${{ matrix.NXF_EDGE }}
	run: \|
	wget -qO- get.nextflow.io \| bash
	chmod +x nextflow
	sudo mv nextflow /usr/local/bin/

	- name: Run pipeline with test data
	run: \|
	nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results

	- name: Login to Docker Hub
	uses: docker/login-action@v1
	with:
	username: ${{ secrets.DOCKERHUB_USERNAME }}
	password: ${{ secrets.DOCKERHUB_TOKEN }}

	- name: Build and publish to docker
	run: \|
	docker build --platform linux/amd64 -t adamd3/bactseq:latest .
	docker push adamd3/bactseq:latest

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