Format clean up

alliance-genome · Jan 26, 2025 · a61c1f7 · a61c1f7
1 parent ac16046
commit a61c1f7
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Showing 4 changed files with 95 additions and 149 deletions.
diff --git a/agr_indexer/src/main/java/org/alliancegenome/indexer/indexers/GoIndexer.java b/agr_indexer/src/main/java/org/alliancegenome/indexer/indexers/GoIndexer.java
@@ -30,7 +30,7 @@ public void index() {
 		log.info("Pulling All Terms Finished");
 
 		Iterable<SearchableItemDocument> docs = goTrans.translateEntities(terms);
-		for(SearchableItemDocument doc: docs) {
+		for (SearchableItemDocument doc : docs) {
 			doc.setPopularity(popularityScore.get(doc.getPrimaryKey()));
 		}
 

diff --git a/agr_indexer/src/main/java/org/alliancegenome/indexer/indexers/Indexer.java b/agr_indexer/src/main/java/org/alliancegenome/indexer/indexers/Indexer.java
@@ -1,6 +1,5 @@
 package org.alliancegenome.indexer.indexers;
 
-
 import java.io.IOException;
 import java.net.URL;
 import java.nio.file.Files;
@@ -41,7 +40,6 @@
 
 import lombok.extern.slf4j.Slf4j;
 
-
 @Slf4j
 public abstract class Indexer extends Thread {
 
@@ -99,7 +97,9 @@ public void afterBulk(long executionId, BulkRequest request, Throwable failure)
 		builder.setConcurrentRequests(indexerConfig.getConcurrentRequests());
 		builder.setBackoffPolicy(BackoffPolicy.exponentialBackoff(TimeValue.timeValueSeconds(1L), 60));
 		bulkProcessor = builder.build();
-		//bulkProcessor = BulkProcessor.builder((request, bulkListener) -> searchClient.bulkAsync(request, RequestOptions.DEFAULT, bulkListener), listener).build();
+		// bulkProcessor = BulkProcessor.builder((request, bulkListener) ->
+		// searchClient.bulkAsync(request, RequestOptions.DEFAULT, bulkListener),
+		// listener).build();
 
 	}
 
@@ -168,7 +168,7 @@ public <D extends ESDocument> void indexDocuments(Iterable<D> docs, Class<?> vie
 				} else {
 					json = om.writeValueAsString(doc);
 				}
-				if(json.length() > 19_000_000) {
+				if (json.length() > 19_000_000) {
 					log.warn("Document is too large for ES skipping: " + json.length());
 					continue;
 				}

diff --git a/...java/org/alliancegenome/indexer/indexers/curation/interfaces/VocabularyRESTInterface.java b/...java/org/alliancegenome/indexer/indexers/curation/interfaces/VocabularyRESTInterface.java
@@ -16,16 +16,13 @@
 import jakarta.ws.rs.QueryParam;
 
 @Path("/vocabularyterm")
-@Produces({"application/json"})
-@Consumes({"application/json"})
+@Produces({ "application/json" })
+@Consumes({ "application/json" })
 public interface VocabularyRESTInterface {
 
 	@POST
 	@Path("/find")
-	@JsonView({View.FieldsAndLists.class})
-	SearchResponse<VocabularyTerm> find(
-		@DefaultValue("0") @QueryParam("page") Integer page, 
-		@DefaultValue("10") @QueryParam("limit") Integer limit, 
-		HashMap<String, Object> params);
+	@JsonView({ View.FieldsAndLists.class })
+	SearchResponse<VocabularyTerm> find(@DefaultValue("0") @QueryParam("page") Integer page, @DefaultValue("10") @QueryParam("limit") Integer limit, HashMap<String, Object> params);
 
 }