BGA Genomic Annotations Lab Pre-Lab

Install Software

• Install R: https://cran.r-project.org/
• Install RStudio: https://www.rstudio.com/products/rstudio/download/
• Install packages needed for this lab (in R): install.packages(pkgs = c('corpcor', 'magrittr', 'stringr', 'readr', 'devtools', 'tidyverse')) or
  • If you're running this from an R console on Sphere, type declare -x R_LIBS_USER="/home/student20/R/x86_64-redhat-linux-gnu-library/3.2" in bash before starting R.
• Install this package: devtools::install_github('andrewGhazi/genomicAnnotationsLab')

Test that you've got the package installed correctly by loading the package with library(genomicAnnotationsLab) and running ?makeScore to look at the help documentation for a function we will be using.

There's nothing to turn in for the pre-lab.

Lab

You can see the most up-to-date version of the lab here.