RC1 - 0.4.2.1

anyoptimization · Mar 8, 2021 · 0975564 · 0975564
1 parent 86ecc8a
commit 0975564
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diff --git a/.github/workflows/master.yml b/.github/workflows/master.yml
@@ -0,0 +1,108 @@
+name: Release
+
+on:
+  push:
+    branches:
+      - master
+
+jobs:
+
+  # tests:
+  #   runs-on: ubuntu-latest
+  #   steps:
+  #     - uses: actions/checkout@v2
+  #     - name: Install Python
+  #       uses: actions/setup-python@v2
+  #       with:
+  #         python-version: 3.9
+  #     - name: Install dependencies
+  #       run: |
+  #         python -m pip install --upgrade pip
+  #         pip install .
+  #         pip install pytest
+  #     - name: Run tests
+  #       run: pytest tests/test_performance_indicator.py
+
+
+  docs:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - name: Install Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: 3.9
+      - name: Create Documentation
+        run: |
+          sudo apt-get install pandoc rsync
+          python -m pip install --upgrade pip
+          cd doc
+          pip install -r requirements.txt
+          make html
+      - name: Upload Documentation
+        uses: trendyminds/github-actions-rsync@master
+        with:
+          RSYNC_OPTIONS: -avzr --delete --exclude '*.ipynb'
+          RSYNC_TARGET: /home/blankjul/pymoo.org/master
+          RSYNC_SOURCE: /doc/build/html/*
+        env:
+          SSH_PRIVATE_KEY: ${{secrets.SSH_PRIVATE_KEY}}
+          SSH_USERNAME: ${{secrets.SSH_USERNAME}}
+          SSH_HOSTNAME: ${{secrets.SSH_HOSTNAME}}
+
+
+
+  build:
+    needs: tests
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, windows-latest, macos-latest]
+        python-version: ['3.7', '3.8', '3.9']
+        exclude:
+          - os: ubuntu-latest
+            python-version: '3.7'
+            python-version: '3.8'
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install setuptools wheel numpy
+    - uses: knicknic/os-specific-run@v1
+      with:
+        linux: python setup.py sdist 
+        macos: python setup.py bdist_wheel
+        windows: python setup.py bdist_wheel
+    - uses: actions/upload-artifact@v2
+      with:
+        name: dist
+        path: dist
+
+  deploy:
+    needs: build
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+    - uses: actions/download-artifact@v2
+      with:
+        name: dist
+        path: dist
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.8'
+    - name: Publish
+      env:
+        TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
+        TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
+      run: |
+        python -m pip install --upgrade pip
+        pip install twine
+        twine upload --skip-existing --repository testpypi dist/*
+
diff --git a/.travis.yml b/.travis.yml
diff --git a/TODO b/TODO
diff --git a/benchmark/benchmark_rvea.py b/benchmark/benchmark_rvea.py
diff --git a/doc/requirements.txt b/doc/requirements.txt
@@ -1,4 +1,8 @@
 sphinx
 numpydoc
 nbsphinx
-sphinxcontrib-bibtex
+sphinxcontrib-bibtex<2.0.0
+pydata-sphinx-theme
+bs4
+matplotlib
+ipython
diff --git a/doc/source/_theme/custom_theme/static/css/custom.css b/doc/source/_theme/custom_theme/static/css/custom.css
@@ -12,34 +12,9 @@
   height: 2em;
   display: inline;
 }
-
-#pymoo-banner {
-  margin: 5px 0px;
-}
-
-
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-
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-
-
-
 
 
 
+#pymoo-banner {
+  margin: 5px 0px;
+}
diff --git a/doc/source/algorithms/brkga.ipynb b/doc/source/algorithms/brkga.ipynb
@@ -138,6 +138,20 @@
     "section": "solve"
    },
    "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "\n",
+      "Compiled modules for significant speedup can not be used!\n",
+      "https://pymoo.org/installation.html#installation\n",
+      "\n",
+      "To disable this warning:\n",
+      "from pymoo.configuration import Configuration\n",
+      "Configuration.show_compile_hint = False\n",
+      "\n"
+     ]
+    },
     {
      "name": "stdout",
      "output_type": "stream",

diff --git a/doc/source/algorithms/cmaes.ipynb b/doc/source/algorithms/cmaes.ipynb
@@ -46,14 +46,28 @@
     "code": "algorithms/usage_cmaes.py"
    },
    "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "\n",
+      "Compiled modules for significant speedup can not be used!\n",
+      "https://pymoo.org/installation.html#installation\n",
+      "\n",
+      "To disable this warning:\n",
+      "from pymoo.configuration import Configuration\n",
+      "Configuration.show_compile_hint = False\n",
+      "\n"
+     ]
+    },
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
       "Best solution found: \n",
-      "X = [0.49999999 0.49999999 0.49999999 0.50000002 0.49999994 0.49999999\n",
-      " 0.50000002 0.50000001 0.5        0.49999995]\n",
-      "F = [6.60238931e-15]\n",
+      "X = [0.5        0.5        0.49999998 0.49999998 0.49999999 0.49999999\n",
+      " 0.49999999 0.49999998 0.5        0.49999998]\n",
+      "F = [1.70729171e-15]\n",
       "CV= [0.]\n"
      ]
     }
@@ -94,20 +108,20 @@
       "==============================================================================\n",
       "n_gen |  n_eval |     fopt     |    sigma     | min std  | max std  |   axis  \n",
       "==============================================================================\n",
-      "    1 |      60 |  0.280118961 |  0.500000000 |  0.50000 |  0.50002 |  1.00005\n",
-      "    2 |      70 |  0.280118961 |  0.459722409 |  0.44491 |  0.46178 |  1.13278\n",
-      "    3 |      80 |  0.280118961 |  0.454247593 |  0.43059 |  0.47709 |  1.26793\n",
-      "    4 |      90 |  0.280118961 |  0.422510878 |  0.39828 |  0.44346 |  1.26617\n",
-      "    5 |     100 |  0.280118961 |  0.361333434 |  0.33582 |  0.37869 |  1.29828\n",
-      "    6 |     110 |  0.280118961 |  0.335004317 |  0.30033 |  0.35013 |  1.29409\n",
-      "    7 |     120 |  0.280118961 |  0.343899924 |  0.30913 |  0.36758 |  1.41768\n",
-      "    8 |     130 |  0.280118961 |  0.330665853 |  0.29241 |  0.35494 |  1.48939\n",
-      "    9 |     140 |  0.280118961 |  0.340884540 |  0.29577 |  0.38328 |  1.63723\n",
-      "   10 |     150 |  0.280118961 |  0.324410284 |  0.27788 |  0.36610 |  1.67792\n",
+      "    1 |      60 |  0.336859093 |  0.500000000 |  0.50000 |  0.50002 |  1.00005\n",
+      "    2 |      70 |  0.336859093 |  0.468987029 |  0.45221 |  0.47541 |  1.17432\n",
+      "    3 |      80 |  0.336859093 |  0.454194747 |  0.43186 |  0.46182 |  1.21377\n",
+      "    4 |      90 |  0.336859093 |  0.444093855 |  0.42255 |  0.45584 |  1.30725\n",
+      "    5 |     100 |  0.336859093 |  0.466675800 |  0.43898 |  0.48437 |  1.44122\n",
+      "    6 |     110 |  0.336859093 |  0.473712844 |  0.43039 |  0.50215 |  1.52184\n",
+      "    7 |     120 |  0.336859093 |  0.468094561 |  0.41709 |  0.51350 |  1.65161\n",
+      "    8 |     130 |  0.336859093 |  0.489893791 |  0.43265 |  0.56477 |  1.65416\n",
+      "    9 |     140 |  0.336859093 |  0.507674096 |  0.44411 |  0.59020 |  1.66534\n",
+      "   10 |     150 |  0.336859093 |  0.510621054 |  0.43294 |  0.59157 |  1.67884\n",
       "Best solution found: \n",
-      "X = [0.60423243 0.42228851 0.52822016 0.51146051 0.58129394 0.07117193\n",
-      " 0.43877331 0.37024565 0.27372449 0.4997964 ]\n",
-      "F = [0.28011896]\n"
+      "X = [0.39559796 0.75732067 0.84421475 0.55333188 0.577376   0.43123249\n",
+      " 0.29055664 0.30977326 0.42313589 0.70430481]\n",
+      "F = [0.33685909]\n"
      ]
     }
    ],