Test all plots and fix minor errors

Still some playground code is broken
aphalo · Oct 12, 2023 · 9e31da7 · 9e31da7
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Showing 11 changed files with 40,779 additions and 40,289 deletions.
diff --git a/R.plotting.Rnw b/R.plotting.Rnw
@@ -683,7 +683,7 @@ In contrast to ``filled'' shapes that obey both \code{color} and \code{fill}, op
 <<scatter-11a, eval=eval_plots_all>>=
 p.base +
   scale_shape_manual(values = c("circle open",
-                                "square oepn",
+                                "square open",
                                 "diamond open"))
 @
 
@@ -972,7 +972,7 @@ Continuous fill scales can be used to control the appearance. Below, code for a
 
 <<tile-plot-04, eval=eval_plots_all>>=
 ggplot(data = randomf.df,
-       mapping = aes(x, y, fill = F.value) +
+       mapping = aes(x, y, fill = F.value)) +
   geom_tile(color = "white") +
   scale_fill_gradient(low = "gray15", high = "gray85", na.value = "red")
 @
@@ -3073,7 +3073,10 @@ opts_chunk$set(opts_fig_very_wide_square)
 A combined plot can be simply assembled using the operators (plot not shown).
 
 <<patchwork-02, eval=eval_plots_all>>=
-p1 | p2 / p3
+p1 | (p2 / p3)
+@
+
+<<patchwork-02a, eval=eval_plots_all>>=
 (p1 | p2) / p3
 @
 
@@ -3420,7 +3423,7 @@ ggplot(data = iris, mapping = aes(x = Petal.Length, y = Species)) +
 
 <<ggplot-debug-02, eval=eval_plots_all>>=
 ggplot(data = iris, mapping = aes(x = Petal.Length)) +
-+     stat_bin(geom = "debug")
+  stat_bin(geom = "debug")
 @
 
 \section{Further reading}

diff --git a/appendixes.prj b/appendixes.prj
@@ -6,7 +6,7 @@
 using-r-main-crc.Rnw
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-3
+10
 
 rbooks.bib
 BibTeX:UNIX
@@ -19,7 +19,7 @@ TeX:RNW
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@@ -37,10 +37,10 @@ TeX:RNW:UNIX
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diff --git a/appendixes.prj.bak b/appendixes.prj.bak
@@ -5,8 +5,8 @@
 1
 using-r-main-crc.Rnw
 24
-17
-4
+16
+10
 
 rbooks.bib
 BibTeX:UNIX
@@ -19,10 +19,7 @@ TeX:RNW
 17837307 0 -1 31573 -1 31580 228 228 1358 1175 1 1 1797 406 -1 -1 0 0 30 -1 -1 30 1 0 31580 -1  0 -1 0
 preface.Rnw
 TeX:RNW:UNIX
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-:\Program Files\MiKTeX\tex\latex\biblatex\biblatex.sty
-TeX:STY:UNIX
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 R.data.containers.Rnw
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@@ -40,10 +37,10 @@ TeX:RNW:UNIX
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 using-r-main-crc.Rnw
 TeX:RNW:UTF-8
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 R.plotting.Rnw
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 usingr.sty
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@@ -59,6 +56,9 @@ TeX:RNW:UNIX
 R.learning.Rnw
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+:\Program Files\MiKTeX\tex\latex\biblatex\biblatex.sty
+TeX:STY:UNIX
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