Update fields returned in pet-linear for prov compatibility

aramis-lab · Mar 14, 2022 · 07204cc · 07204cc
1 parent 54b3ffe
commit 07204cc
Show file tree

Hide file tree

Showing 2 changed files with 6 additions and 5 deletions.
diff --git a/clinica/engine/provenance.py b/clinica/engine/provenance.py
@@ -155,13 +155,14 @@ def log_prov(prov_log_record, out_file, out_dir):
 
     from clinica.engine.prov_utils import write_prov_file
 
-    out_file = out_file + "*"
     out_files_paths = []
+
     if isinstance(out_file, list):
         for x in out_file:
             out_files_paths.extend(list(Path(out_dir).rglob(x)))
     elif isinstance(out_file, str):
-        out_files_paths = list(Path(out_dir).rglob(out_file))
+
+        out_files_paths = list(Path(out_dir).rglob(Path(out_file).name))
 
     for path_file in out_files_paths:
         write_prov_file(prov_log_record, path_file)

diff --git a/clinica/pipelines/pet_linear/pet_linear_pipeline.py b/clinica/pipelines/pet_linear/pet_linear_pipeline.py
@@ -43,9 +43,9 @@ def get_output_fields(self):
             A list of (string) output fields name.
         """
         return [
-            "registered_pet",
-            "transform_mat",
-            "registered_pet_in_t1w",
+            "suvr_pet",
+            "affine_mat",
+            "PETinT1w",
         ]  # Fill here the list
 
     def build_input_node(self):