Code

Intialize Provenance Tracking#423

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omar-rifai wants to merge 24 commits intoaramis-lab:devaramis-lab/clinica:devfrom omar-rifai:feat_init_traceabilityomar-rifai/clinica:feat_init_traceabilityCopy head branch name to clipboard

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Commits

Commits on Mar 14, 2022

• Init traceability feature

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  5dc0d02

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• Add function to create new provenance files

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  b1bc38e

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• Update clinica_file_reader call

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  9c0ee0d

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• Add data model

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• rename files

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  6b28410

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• Update prov with Data Model

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  8fdf9e7

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• Fix typing with list

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  47f9ce5

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• Fix various issues

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  a3ef086

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• Rename prov extraction functions

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  bd4636b

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• Deserialize json-ld

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  5dc8475

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• Update record data model and serialization/deserialization

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  8f384c5

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• Clean up unused code

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  d32e06f

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• fix conflict in rebase

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  126ce0b

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• Update prov jsonld representation

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  672c28c

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• manually lint code

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  39a2064

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• Start extending workflow to other pipelines

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  46b9892

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• Connect provenance through nipype nodes

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  f2c5300

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• Add context to provenance

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  fdf8ed7

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• specify error type in try catch

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  203d84d

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• Revert changes in clinica/utils/ after architecture change

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  cb31dd1

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• Homogenize the funcs get_input_fields() get_output_fields()

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  4687211

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• Remove unused imports

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  ddc82c8

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• Lint __init__ file in engine

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  54b3ffe

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• Update fields returned in pet-linear for prov compatibility

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