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Atul Kakrana edited this page Mar 11, 2017 · 4 revisions

sPARTA : Small RNA-PARE Target Analyzer

NOTE: This wiki is a work in progress

updated : 01/01/2017
version : 1.22
release : https://github.com/atulkakrana/sPARTA/releases
citation : [Kakrana, A., Hammond, R., Patel, P., Nakano, M. & Meyers, B. C. sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software. Nucleic Acids Res. gku693– (2014). doi:10.1093/nar/gku693] (https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gku693)

###Description

small RNA-PARE Target Analyzer (sPARTA) is a tool which utilizes high-throughput sequencing to profile genome-wide cleavage products. sPARTA begins with a built-in parallelized target prediction module for plant miRNAs called miRferno. sPARTA as a whole utilizes multi-core servers to achieve two-dimensional parallelization in order to maintain a low memory footprint, imperative to achieve a full genome analysis.

Please contact author [here] (https://github.com/atulkakrana/sPARTA/issues) for any further questions or issues

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