Use R universe for building/distributing aaltobda package

.github/workflows/render.yml

@@ -1,7 +1,7 @@
 on:
   push:
     branches:
-      - master
+      - r-universe-aaltobda
     # paths: ['**.Rmd']
 
 name: Render and Publish Website
@@ -31,17 +31,12 @@ jobs:
         uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
-          extra-repositories: 'https://stan-dev.r-universe.dev'
+          extra-repositories: 'https://stan-dev.r-universe.dev https://avehtari.r-universe.dev'
 
       - name: Install R dependencies
         uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          packages:
-              any::rmarkdown
-              any::sessioninfo
-              any::tidyr
-              local::rpackage
-              any::cmdstanr
+          packages: rmarkdown, sessioninfo, tidyr, rpackage, cmdstanr, aaltobda
 
       - name: Render Main Rmarkdown Website
         run: rmarkdown::render_site()

FAQ.Rmd

@@ -122,7 +122,7 @@ The course has its own R package `aaltobda` with data and
 functionality to simplify coding. `aaltobda` has been pre-installed in
 Aalto JupyterHub. To install the package to your own computer just run the following:
 
-1. `install.packages("aaltobda", repos = c("https://avehtari.github.io/BDA_course_Aalto/", getOption("repos")))`
+1. `install.packages("aaltobda", repos = c("https://avehtari.r-universe.dev", getOption("repos")))`
 
 If during the course there is announcement that `aaltobda` has been
 updated (e.g. some error has been fixed), you can get the latest
@@ -244,4 +244,3 @@ Here are some great Aalto courses that are using Bayesian inference
 - [CS-E4895 - Gaussian Processes](https://mycourses.aalto.fi/course/view.php?id=44810)
 - [CS-E5795 - Computational Methods in Stochastics](https://mycourses.aalto.fi/course/info.php?id=40704) (more about MC, MCMC, HMC)
 - [MS-E1654 - Computational Inverse Problems](https://mycourses.aalto.fi/course/info.php?id=40592)
-

assignments/assignment6.qmd

@@ -52,7 +52,7 @@ JupyterHub has all the needed packages pre-installed.
 The following installs and loads the `aaltobda` package:
 ```{r}
 if(!require(aaltobda)){
-    install.packages("aaltobda", repos = c("https://avehtari.github.io/BDA_course_Aalto/", getOption("repos")))
+    install.packages("aaltobda", repos = c("https://avehtari.r-universe.dev", getOption("repos")))
     library(aaltobda)
 }
 ```

assignments/includes/_general_info.md

@@ -20,7 +20,7 @@
   To install the package on your own system, run
   the following code (upgrade=\"never\" skips question about updating other packages):
 ```{.r}
-install.packages("aaltobda", repos = c("https://avehtari.github.io/BDA_course_Aalto/", getOption("repos")))
+install.packages("aaltobda", repos = c("https://avehtari.r-universe.dev", getOption("repos")))
 ```
 -   Many of the exercises can be checked automatically using the R
     package `markmyassignment` (pre-installed in JupyterHub).
@@ -71,4 +71,4 @@ install.packages("aaltobda", repos = c("https://avehtari.github.io/BDA_course_Aa
 If the pdf is blank, nonsense, or something like only a copy of the questions, 1) report it as problematic in Peergrade-interface to get another report to review, and 2) send a message to TAs.
 * Is the report anonymous?
 
-:::
+:::

assignments/simple_template3.qmd

@@ -51,7 +51,7 @@ set_assignment(assignment_path)
 The following installs and loads the `aaltobda` package:
 ```{r}
 if(!require(aaltobda)){
-    install.packages("aaltobda", repos = c("https://avehtari.github.io/BDA_course_Aalto/", getOption("repos")))
+    install.packages("aaltobda", repos = c("https://avehtari.r-universe.dev", getOption("repos")))
     library(aaltobda)
 }
 ```

assignments/template2.qmd

@@ -60,7 +60,7 @@ The following installs the `aaltobda` package:
 ```{r}
 #| cache: true
 # Caching should be fine here
-install.packages("aaltobda", repos = c("https://avehtari.github.io/BDA_course_Aalto/", getOption("repos")))
+install.packages("aaltobda", repos = c("https://avehtari.r-universe.dev", getOption("repos")))
 ```
 
 :::

assignments/template3.qmd

@@ -51,7 +51,7 @@ set_assignment(assignment_path)
 The following installs and loads the `aaltobda` package:
 ```{r}
 if(!require(aaltobda)){
-    install.packages("aaltobda", repos = c("https://avehtari.github.io/BDA_course_Aalto/", getOption("repos")))
+    install.packages("aaltobda", repos = c("https://avehtari.r-universe.dev", getOption("repos")))
     library(aaltobda)
 }
 ```

assignments/template4.qmd

@@ -51,7 +51,7 @@ set_assignment(assignment_path)
 The following installs and loads the `aaltobda` package:
 ```{r}
 if(!require(aaltobda)){
-    install.packages("aaltobda", repos = c("https://avehtari.github.io/BDA_course_Aalto/", getOption("repos")))
+    install.packages("aaltobda", repos = c("https://avehtari.r-universe.dev", getOption("repos")))
     library(aaltobda)
 }
 ```

assignments/template5.qmd

@@ -51,7 +51,7 @@ set_assignment(assignment_path)
 The following installs and loads the `aaltobda` package:
 ```{r}
 if(!require(aaltobda)){
-    install.packages("aaltobda", repos = c("https://avehtari.github.io/BDA_course_Aalto/", getOption("repos")))
+    install.packages("aaltobda", repos = c("https://avehtari.r-universe.dev", getOption("repos")))
     library(aaltobda)
 }
 ```

assignments/template6.qmd

@@ -43,7 +43,7 @@ JupyterHub has all the needed packages pre-installed.
 The following installs and loads the `aaltobda` package:
 ```{r}
 if(!require(aaltobda)){
-    install.packages("aaltobda", repos = c("https://avehtari.github.io/BDA_course_Aalto/", getOption("repos")))
+    install.packages("aaltobda", repos = c("https://avehtari.r-universe.dev", getOption("repos")))
     library(aaltobda)
 }
 ```