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v1.2.0
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@aws-genomics-automation aws-genomics-automation released this 17 Feb 17:46
· 16 commits to 65d291a0e15927f5503f367682a5f1aefd16af79 since this release
v1.2.0
27ceaf0

If upgrading to AGC version 1.2.0 please do the following:

  1. $ agc context destroy
  2. $ agc account deactivate
  3. download and install the new release of agc
  4. $ agc account activate
  5. re-deploy contexts as needed

Features

  • Add AGC version tag to AWS resources (#243) (fc6cad7)
  • Add WES API endpoint information to agc context describe output (#253) (6145db3)
  • Bootstrap CDK during Account Activation (#272) (5228492)
  • context destroy --force flag (#118) (4282093)
  • don't use ebs auto scale for minidl (#300) (225d139)
  • Enable hosting assets in AWS commercial regions (#240) (2eb5007)
  • Improve context stack deployment speed (#150) (f7d6c7f)
  • improve reliability of provision scripts (#308) (16eff36)
  • Improved Workflow logs (#156) (f71231c)
  • Initial infrastructure for MiniWdl support (#125) (387393a)
  • Introducing AWS Lambda based WES Adapter for running the workflows (#155) (bd90f47)

Bug Fixes

  • Add AGC assets bucket to project read list (#247) (2019b6a)
  • add build wes adapter step to run dev script and readme (#307) (466ea69)
  • Adds a message when new logs aren't shown to the user immediately (#131) (54349d2)
  • Allow home directory path in workflow project config (#137) (760ed3c)
  • Asserts order deterministically (#153) (c4299e8)
  • container validation check with the correct region from user profile (#310) (c36a1f0)
  • correctly handle missing return code from Cromwell executions (#276) (3c61735)
  • correctly link to core app (#133) (ce103b2)
  • Delete bootstrap bucket on account deactivate (#306) (a81710b)
  • deploy wes adapter code as cdk asset (#321) (cbaa38c)
  • Deregionalize min permissions (#128) (c4dc96b)
  • Fix project data path prefix and docs (#315) (69a6bb4)
  • fixed arg validation for format (#198) (0b68019)
  • Fixes how inputs are processed in AGC via Manifest (#277) (be5c684)
  • Fixes how users interact with the context commands (#115) (ffb3bb6)
  • Fixes the mechanism for copying the directory contents (#311) (29f8e9e)
  • fixing monocdk imports (#190) (9c94fd8)
  • force use node v14 in cdk package (d67a18c)
  • function for default config (#201) (e6983ae)
  • Handle errors from CDK command (#245) (99d9378)
  • improve contrast in docs (#149) (beb10f4)
  • Increasing WES adapter lambda timeout (#180) (20cd77d)
  • invalid AWS Health url (#130) (1aef83b)
  • miniwdl interpolation workaround (27f4bf5)
  • nest batch artifacts and disable bucket clean up (#262) (73bb98d)
  • Nextflow workflow logs unmarshal number (#286) (1ddf67c)
  • Nextflow workflow logs unmarshal number (#286) (f739f03)
  • Pass engine endpoint directly the wes adapter (#122) (81ed484)
  • Pinned running of rnaseq to version 3.4 (5386a3c)
  • progress bar doesn't show any progress (#166) (9dd17ae)
  • Remove Chdir when looking for project files (#228) (3564d6f)
  • rename unassigned variable (#329) (a3c26a8)
  • Respect maxVCpus in miniwdl contexts (#202) (e4ad17e)
  • Return timezone information in RunLog (#174) (118e1e2)
  • Revert shrinkwrap upgrade (#298) (9dd6806)
  • Scope down batch role permissions (#230) (14a5aca)
  • show logs for workflows with more than 100 tasks (#114) (4e54c3b)
  • show warning when user choose ARM based instance type in verbose mode during context deployment (3967b81)
  • Shows the relevant error if the workflow logs can't be retrieved (#103) (2051b95)
  • switch from a progress bar to a spinner (#203) (1ae9c8a)
  • temporary folder potential leak in some error scenarios. unit test for cdk command execution (#140) (c50608e)
  • Typo in documentation (#255) (db57703)
  • unique project name (#171) (2cb4303)
  • update go dependency versions (#284) (55f9bed)
  • update go dependency versions (#284) (5925da5)
  • updates context describe to be consistent with context destroy (#143) (bb7667b)
  • updates how the logs are shown from cloudwatch (#142) (1502578)
  • Use correct context name (#132) (c1516b6)
  • use fixed python 3.9 in wes adapter (f88a69e)
  • use proper assertion in order to avoid sporadic unit test failures (#167) (a836f20)
  • use proper go tags for windows build (#117) (7dfa94a)
  • Using shrinkwrap and ci to install set NPM dependencies (#193) (27f456e)
  • Workflow status now ignores unqueryable stacks (#138) (cf817a8)
  • workflows from demo-wdl-project should run without errors out of the box (#108) (6960eac)
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