removed spaces in "site" directories

bbglab · Oct 10, 2022 · ea9617d · ea9617d
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diff --git a/site/Cluster basics/Backups/index.html → site/Cluster_basics/Backups/index.html b/site/Cluster basics/Backups/index.html → site/Cluster_basics/Backups/index.html
diff --git a/site/Cluster basics/Headers/index.html → site/Cluster_basics/Headers/index.html b/site/Cluster basics/Headers/index.html → site/Cluster_basics/Headers/index.html
diff --git a/site/Cluster basics/Interactive/index.html → site/Cluster_basics/Interactive/index.html b/site/Cluster basics/Interactive/index.html → site/Cluster_basics/Interactive/index.html
diff --git a/site/Cluster basics/Screen/index.html → site/Cluster_basics/Screen/index.html b/site/Cluster basics/Screen/index.html → site/Cluster_basics/Screen/index.html
diff --git a/site/Cluster basics/Structure/index.html → site/Cluster_basics/Structure/index.html b/site/Cluster basics/Structure/index.html → site/Cluster_basics/Structure/index.html
diff --git a/...er basics/Submitting jobs/Qmap/index.html → ...er_basics/Submitting_jobs/Qmap/index.html b/...er basics/Submitting jobs/Qmap/index.html → ...er_basics/Submitting_jobs/Qmap/index.html
diff --git a/...r basics/Submitting jobs/SLURM/index.html → ...r_basics/Submitting_jobs/SLURM/index.html b/...r basics/Submitting jobs/SLURM/index.html → ...r_basics/Submitting_jobs/SLURM/index.html
diff --git a/...sets/General datasets/BeastAML/index.html → ...sets/General_datasets/BeastAML/index.html b/...sets/General datasets/BeastAML/index.html → ...sets/General_datasets/BeastAML/index.html
diff --git a/...Datasets/General datasets/CGCI/index.html → ...Datasets/General_datasets/CGCI/index.html b/...Datasets/General datasets/CGCI/index.html → ...Datasets/General_datasets/CGCI/index.html
diff --git a/...atasets/General datasets/CPTAC/index.html → ...atasets/General_datasets/CPTAC/index.html b/...atasets/General datasets/CPTAC/index.html → ...atasets/General_datasets/CPTAC/index.html
diff --git a/...atasets/General datasets/GENIE/index.html → ...atasets/General_datasets/GENIE/index.html b/...atasets/General datasets/GENIE/index.html → ...atasets/General_datasets/GENIE/index.html
diff --git a/...asets/General datasets/Hartwig/index.html → ...asets/General_datasets/Hartwig/index.html b/...asets/General datasets/Hartwig/index.html → ...asets/General_datasets/Hartwig/index.html
diff --git a/...Datasets/General datasets/ICGC/index.html → ...Datasets/General_datasets/ICGC/index.html b/...Datasets/General datasets/ICGC/index.html → ...Datasets/General_datasets/ICGC/index.html
diff --git a/...atasets/General datasets/PCAWG/index.html → ...atasets/General_datasets/PCAWG/index.html b/...atasets/General datasets/PCAWG/index.html → ...atasets/General_datasets/PCAWG/index.html
diff --git a/...General datasets/PedcBioPortal/index.html → ...General_datasets/PedcBioPortal/index.html b/...General datasets/PedcBioPortal/index.html → ...General_datasets/PedcBioPortal/index.html
diff --git a/...tasets/General datasets/StJude/index.html → ...tasets/General_datasets/StJude/index.html b/...tasets/General datasets/StJude/index.html → ...tasets/General_datasets/StJude/index.html
diff --git a/...ts/General datasets/StJudeLife/index.html → ...ts/General_datasets/StJudeLife/index.html b/...ts/General datasets/StJudeLife/index.html → ...ts/General_datasets/StJudeLife/index.html
diff --git a/...tasets/General datasets/TARGET/index.html → ...tasets/General_datasets/TARGET/index.html b/...tasets/General datasets/TARGET/index.html → ...tasets/General_datasets/TARGET/index.html
diff --git a/...Datasets/General datasets/TCGA/index.html → ...Datasets/General_datasets/TCGA/index.html b/...Datasets/General datasets/TCGA/index.html → ...Datasets/General_datasets/TCGA/index.html
diff --git a/...ts/General datasets/UK Biobank/index.html → ...ts/General_datasets/UK_Biobank/index.html b/...ts/General datasets/UK Biobank/index.html → ...ts/General_datasets/UK_Biobank/index.html
diff --git a/...ts/General datasets/cBioPortal/index.html → ...ts/General_datasets/cBioPortal/index.html b/...ts/General datasets/cBioPortal/index.html → ...ts/General_datasets/cBioPortal/index.html
diff --git a/...ts/Inhouse datasets/ALL cohort/index.html → ...ts/Inhouse_datasets/ALL_cohort/index.html b/...ts/Inhouse datasets/ALL cohort/index.html → ...ts/Inhouse_datasets/ALL_cohort/index.html
diff --git a/...s/Inhouse datasets/Damage maps/index.html → ...s/Inhouse_datasets/Damage_maps/index.html b/...s/Inhouse datasets/Damage maps/index.html → ...s/Inhouse_datasets/Damage_maps/index.html
diff --git a/...Inhouse datasets/Nanopore data/index.html → ...Inhouse_datasets/Nanopore_data/index.html b/...Inhouse datasets/Nanopore data/index.html → ...Inhouse_datasets/Nanopore_data/index.html
diff --git a/...sets/Pediatric Rhabdoid cohort/index.html → ...sets/Pediatric_Rhabdoid_cohort/index.html b/...sets/Pediatric Rhabdoid cohort/index.html → ...sets/Pediatric_Rhabdoid_cohort/index.html
diff --git a/.../Pediatric Secondary neoplasms/index.html → .../Pediatric_Secondary_neoplasms/index.html b/.../Pediatric Secondary neoplasms/index.html → .../Pediatric_Secondary_neoplasms/index.html
diff --git a/...her data/Canonical transcripts/index.html → ...her_data/Canonical_transcripts/index.html b/...her data/Canonical transcripts/index.html → ...her_data/Canonical_transcripts/index.html
diff --git a/...ets/Other data/Genomic regions/index.html → ...ets/Other_data/Genomic_regions/index.html b/...ets/Other data/Genomic regions/index.html → ...ets/Other_data/Genomic_regions/index.html
diff --git a/...atasets/Other data/Nmdetective/index.html → ...atasets/Other_data/Nmdetective/index.html b/...atasets/Other data/Nmdetective/index.html → ...atasets/Other_data/Nmdetective/index.html
diff --git a/...s/Other data/Reference genomes/index.html → ...s/Other_data/Reference_genomes/index.html b/...s/Other data/Reference genomes/index.html → ...s/Other_data/Reference_genomes/index.html
diff --git a/... scripts/Intogen-BoostDM plots/index.html → ..._scripts/Intogen-BoostDM_plots/index.html b/... scripts/Intogen-BoostDM plots/index.html → ..._scripts/Intogen-BoostDM_plots/index.html
diff --git a/...and scripts/Mutational profile/index.html → ...and_scripts/Mutational_profile/index.html b/...and scripts/Mutational profile/index.html → ...and_scripts/Mutational_profile/index.html
diff --git a/.../Plots and scripts/Needle plot/index.html → .../Plots_and_scripts/Needle_plot/index.html b/.../Plots and scripts/Needle plot/index.html → .../Plots_and_scripts/Needle_plot/index.html
diff --git a/...ools/Sequencing tools/Bedtools/index.html → ...ools/Sequencing_tools/Bedtools/index.html b/...ools/Sequencing tools/Bedtools/index.html → ...ools/Sequencing_tools/Bedtools/index.html
diff --git a/...Tools/Sequencing tools/Bowtie2/index.html → ...Tools/Sequencing_tools/Bowtie2/index.html b/...Tools/Sequencing tools/Bowtie2/index.html → ...Tools/Sequencing_tools/Bowtie2/index.html
diff --git a/...ools/Sequencing tools/Cutadapt/index.html → ...ools/Sequencing_tools/Cutadapt/index.html b/...ools/Sequencing tools/Cutadapt/index.html → ...ools/Sequencing_tools/Cutadapt/index.html
diff --git a/.../Tools/Sequencing tools/Fastqc/index.html → .../Tools/Sequencing_tools/Fastqc/index.html b/.../Tools/Sequencing tools/Fastqc/index.html → .../Tools/Sequencing_tools/Fastqc/index.html
diff --git a/...ools/Sequencing tools/Samtools/index.html → ...ools/Sequencing_tools/Samtools/index.html b/...ools/Sequencing tools/Samtools/index.html → ...ools/Sequencing_tools/Samtools/index.html
diff --git a/...s/Sequencing tools/Trimmomatic/index.html → ...s/Sequencing_tools/Trimmomatic/index.html b/...s/Sequencing tools/Trimmomatic/index.html → ...s/Sequencing_tools/Trimmomatic/index.html
diff --git a/...Variant callers/MosaicForecast/index.html → ...Variant_callers/MosaicForecast/index.html b/...Variant callers/MosaicForecast/index.html → ...Variant_callers/MosaicForecast/index.html
diff --git a/... tools/Variant callers/Mutect2/index.html → ..._tools/Variant_callers/Mutect2/index.html b/... tools/Variant callers/Mutect2/index.html → ..._tools/Variant_callers/Mutect2/index.html
diff --git a/...tools/Variant callers/Platinum/index.html → ...tools/Variant_callers/Platinum/index.html b/...tools/Variant callers/Platinum/index.html → ...tools/Variant_callers/Platinum/index.html
diff --git a/...ng tools/Variant callers/Sarek/index.html → ...ng_tools/Variant_callers/Sarek/index.html b/...ng tools/Variant callers/Sarek/index.html → ...ng_tools/Variant_callers/Sarek/index.html
diff --git a/site/Tools/Sequencing tools/Vep/index.html → site/Tools/Sequencing_tools/Vep/index.html b/site/Tools/Sequencing tools/Vep/index.html → site/Tools/Sequencing_tools/Vep/index.html
diff --git a/site/Tools/Sequencing tools/pysam/index.html → site/Tools/Sequencing_tools/pysam/index.html b/site/Tools/Sequencing tools/pysam/index.html → site/Tools/Sequencing_tools/pysam/index.html
diff --git a/...ignature tools/DeconstructSigs/index.html → ...ignature_tools/DeconstructSigs/index.html b/...ignature tools/DeconstructSigs/index.html → ...ignature_tools/DeconstructSigs/index.html
diff --git a/...ls/Signature tools/SigProfiler/index.html → ...ls/Signature_tools/SigProfiler/index.html b/...ls/Signature tools/SigProfiler/index.html → ...ls/Signature_tools/SigProfiler/index.html
diff --git a/...gnature tools/SigProfilerJulia/index.html → ...gnature_tools/SigProfilerJulia/index.html b/...gnature tools/SigProfilerJulia/index.html → ...gnature_tools/SigProfilerJulia/index.html
diff --git a/.../Tools/Signature tools/mSigHDP/index.html → .../Tools/Signature_tools/mSigHDP/index.html b/.../Tools/Signature tools/mSigHDP/index.html → .../Tools/Signature_tools/mSigHDP/index.html
diff --git a/...Tools/Signature tools/mSignAct/index.html → ...Tools/Signature_tools/mSignAct/index.html b/...Tools/Signature tools/mSignAct/index.html → ...Tools/Signature_tools/mSignAct/index.html