Fix CI for publishing #47
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build and Publish | |
| on: | |
| push: | |
| tags: | |
| - "**" | |
| branches: | |
| - "**" | |
| permissions: | |
| contents: read | |
| env: | |
| TERM: xterm | |
| PYTHON_VERSION: 3.11 | |
| jobs: | |
| checks: | |
| name: Check code | |
| runs-on: ubuntu-latest | |
| env: | |
| RUFF_FORMAT: github | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Check format | |
| run: | | |
| make check-format || true | |
| BOLDRED=$(tput bold && tput setaf 1) | |
| RESET=$(tput sgr0) | |
| echo "${BOLDRED}==> We won't penalise formatting errors for the time being, but we will in the future.${RESET}" | |
| - name: Check lint | |
| run: | | |
| make check-lint || true | |
| BOLDRED=$(tput bold && tput setaf 1) | |
| RESET=$(tput sgr0) | |
| echo "${BOLDRED}==> We won't enforce linting errors for the time being, but we will in the future.${RESET}" | |
| sdist-build: | |
| name: Build sdist | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Build sdist | |
| run: make build-sdist | |
| - name: Upload packages | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: sdist | |
| path: dist | |
| wheels-build: | |
| name: Build wheels | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Build wheels | |
| run: make build-wheels | |
| - name: Upload packages | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-${{ matrix.os }} | |
| path: dist | |
| docker-build: | |
| name: Build Docker image | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Check Dockerfile | |
| run: make check-docker | |
| - name: Build Docker image | |
| run: make save-image | |
| # TODO: Enable this when we figure out how to run it without having to download several Gigabytes of data. | |
| # - name: Test Docker image | |
| # run: make run-example | |
| - name: Upload Docker image | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: docker-image | |
| path: oncodrivefml.tar | |
| docs-build: | |
| name: Build documentation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Build the docs | |
| shell: bash | |
| run: make docs | |
| - name: Upload documentation | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: documentation | |
| path: docs/build | |
| check-version: | |
| name: Check version | |
| runs-on: ubuntu-latest | |
| if: startsWith(github.ref, 'refs/tags/') | |
| needs: | |
| - checks | |
| - sdist-build | |
| - wheels-build | |
| - docker-build | |
| - docs-build | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Check version matching the tag | |
| run: make check-version | |
| packages-publish: | |
| name: Publish packages | |
| runs-on: ubuntu-latest | |
| if: startsWith(github.ref, 'refs/tags/') | |
| needs: | |
| - check-version | |
| - sdist-build | |
| - wheels-build | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Download packages | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: dist | |
| - name: Publish to PyPI | |
| env: | |
| PYPI_TOKEN: ${{ secrets.PYPI_TOKEN }} | |
| run: make publish-dist | |
| docker-push: | |
| name: Push Docker image | |
| if: startsWith(github.ref, 'refs/tags/') | |
| runs-on: ubuntu-latest | |
| needs: | |
| - check-version | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Download Docker image | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: docker-image | |
| - name: Login to DockerHub | |
| env: | |
| DOCKER_USERNAME: ${{ secrets.DOCKER_USERNAME }} | |
| DOCKER_PASSWORD: ${{ secrets.DOCKER_PASSWORD }} | |
| run: make docker-login | |
| - name: Push Docker image | |
| run: make load-image push-image |