Fix CI for publishing #63
Workflow file for this run
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| name: Build and Publish | |
| on: | |
| push: | |
| tags: | |
| - "**" | |
| branches: | |
| - "**" | |
| permissions: | |
| contents: read | |
| env: | |
| TERM: xterm | |
| PYTHON_VERSION: 3.11 | |
| jobs: | |
| check-version: | |
| name: Check version | |
| runs-on: ubuntu-latest | |
| if: startsWith(github.ref, 'refs/tags/') | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Check version matching the tag | |
| run: make check-version | |
| check-code: | |
| name: Check code | |
| runs-on: ubuntu-latest | |
| env: | |
| RUFF_FORMAT: github | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Check format | |
| run: | | |
| make check-format || true | |
| BOLDRED=$(tput bold && tput setaf 1) | |
| RESET=$(tput sgr0) | |
| echo "${BOLDRED}==> We won't penalise formatting errors for the time being, but we will in the future.${RESET}" | |
| - name: Check lint | |
| run: | | |
| make check-lint || true | |
| BOLDRED=$(tput bold && tput setaf 1) | |
| RESET=$(tput sgr0) | |
| echo "${BOLDRED}==> We won't enforce linting errors for the time being, but we will in the future.${RESET}" | |
| docs-build: | |
| name: Build documentation | |
| runs-on: ubuntu-latest | |
| needs: | |
| - check-code | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Build the docs | |
| shell: bash | |
| run: make docs | |
| - name: Upload documentation | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: documentation | |
| path: docs/build | |
| sdist-build: | |
| name: Build sdist | |
| runs-on: ubuntu-latest | |
| needs: | |
| - check-code | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Build sdist | |
| run: make build-sdist | |
| - name: Upload packages | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: packages-sdist | |
| path: dist | |
| wheels-build: | |
| name: Build wheels | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| needs: | |
| - check-code | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Build wheels | |
| run: make build-wheels | |
| - name: Upload packages | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: packages-wheels-${{ matrix.os }} | |
| path: dist | |
| packages-publish: | |
| name: Publish packages | |
| runs-on: ubuntu-latest | |
| if: startsWith(github.ref, 'refs/tags/') | |
| needs: | |
| - check-version | |
| - sdist-build | |
| - wheels-build | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Download packages | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: packages-* | |
| merge-multiple: true | |
| path: dist | |
| - name: Publish to PyPI | |
| env: | |
| PYPI_TOKEN: ${{ secrets.PYPI_TOKEN }} | |
| run: make publish-dist | |
| docker-build: | |
| name: Build Docker image | |
| runs-on: ubuntu-latest | |
| needs: | |
| - check-code | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Check Dockerfile | |
| run: make check-docker | |
| - name: Build Docker image | |
| run: make save-image | |
| # TODO: Enable this when we figure out how to run it without having to download several Gigabytes of data. | |
| # - name: Test Docker image | |
| # run: make run-example | |
| - name: Upload Docker image | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: docker-image | |
| path: oncodrivefml.tar | |
| docker-push: | |
| name: Push Docker image | |
| if: startsWith(github.ref, 'refs/tags/') | |
| runs-on: ubuntu-latest | |
| needs: | |
| - check-version | |
| - docker-build | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Download Docker image | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: docker-image | |
| - name: Login to DockerHub | |
| env: | |
| DOCKER_USERNAME: ${{ secrets.DOCKER_USERNAME }} | |
| DOCKER_PASSWORD: ${{ secrets.DOCKER_PASSWORD }} | |
| run: make docker-login | |
| - name: Push Docker image | |
| run: make load-image push-image |