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Fix CI for publishing
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@@ -38,6 +38,9 @@ docs/build | |
# External users tests | ||
external_checks | ||
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# VSCode | ||
.vscode/ | ||
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.ruff_cache/ | ||
.venv | ||
data/ |
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__logger_name__ = 'oncodrivefml' | ||
__version__ = "2.5.0" | ||
__version__ = "2.5.0rc1" |
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[project] | ||
name = "oncodrivefml" | ||
dynamic = ["version"] | ||
description = "Identify signals of positive selection in somatic mutations" | ||
readme = "README.md" | ||
license = {file = "LICENSE"} | ||
authors = [ | ||
{ name = "BBGLab (Barcelona Biomedical Genomics Lab)", email = "bbglab@irbbarcelona.org" }, | ||
] | ||
requires-python = ">=3.8.0,<3.12.0" | ||
dependencies = [ | ||
"ago==0.0.93", | ||
"bgcache==0.1", | ||
"bgconfig==0.10", | ||
"bgdata>=2.0.4", | ||
"bglogs==0.6", | ||
"bgparsers==0.10", | ||
"bgreference==0.6", | ||
"bgsignature==0.2", | ||
"bokeh==1.4.0", | ||
"click==8.0.4", | ||
"intervaltree==3.1.0", | ||
"Jinja2==3.0.3", | ||
"numpy==1.24.4", | ||
"matplotlib==3.6.3", | ||
"pandas==1.5.3", | ||
"pytabix==0.1", | ||
"scipy==1.10.1", | ||
"statsmodels==0.14.0", | ||
] | ||
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[project.scripts] | ||
oncodrivefml = "oncodrivefml.main:cmdline" | ||
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[project.urls] | ||
Download = "https://pypi.org/project/oncodrivefml/#history" | ||
Homepage = "https://github.com/bbglab/oncodrivefml" | ||
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# [build-system] | ||
# requires = ["setuptools>=74.1", "Cython==0.29.37"] | ||
# build-backend = "setuptools.build_meta" | ||
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# [tool.setuptools] | ||
# ext-modules = [ | ||
# { name = "oncodrivefml.walker_cython", sources = ["oncodrivefml/walker_cython.pyx"] } | ||
# ] | ||
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# [tool.setuptools.packages] | ||
# find = {} | ||
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# [tool.setuptools.package-data] | ||
# oncodrivefml = ["*.txt.gz", "*.conf.template", "*.conf.template.spec", "*.pyx", "*.json.gz"] | ||
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[build-system] | ||
requires = ["hatchling", "Cython==0.29.37", "cibuildwheel==2.22.0"] | ||
build-backend = "hatchling.build" | ||
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[tool.hatch.version] | ||
path = "oncodrivefml/__init__.py" | ||
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[tool.hatch.build.targets.sdist] | ||
include = ["/oncodrivefml"] | ||
exclude = ["*.c", "*.so"] | ||
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[tool.hatch.build.targets.wheel] | ||
packages = ["extra", "oncodrivefml"] | ||
exclude = ["*.c", "*.so"] | ||
include = [ | ||
"oncodrivefml/*.txt.gz", | ||
"oncodrivefml/*.conf.template", | ||
"oncodrivefml/*.conf.template.spec", | ||
"oncodrivefml/*.pyx", | ||
"oncodrivefml/*.json.gz" | ||
] | ||
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[tool.hatch.build.targets.wheel.hooks.cython] | ||
dependencies = ["hatch-cython"] | ||
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[tool.hatch.build.targets.wheel.hooks.cython.options] | ||
src = ["oncodrivefml/walker_cython.pyx"] |