Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

fix: update-samplesheet execute test & fix for snappy-compatible #254

Merged
merged 4 commits into from
Feb 3, 2025

Conversation

Nicolai-vKuegelgen
Copy link
Contributor

No description provided.

Copy link
Member

@tedil tedil left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks fine to me, though I would consider replacing the names used with foobar names.

Comment on lines +654 to +655
study_tsv = MV_isa_json["studies"]["s_modellvorhaben_rare_diseases.txt"]['tsv']
assay_tsv = MV_isa_json["assays"]["a_modellvorhaben_rare_diseases_genome_sequencing.txt"]['tsv']
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Use placeholder/foobar names instead?

Comment on lines +686 to +687
("s_modellvorhaben_rare_diseases.txt", expected_s),
("a_modellvorhaben_rare_diseases_genome_sequencing.txt", expected_a),
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

see above

Comment on lines +718 to +719
("s_modellvorhaben_rare_diseases.txt", expected_s),
("a_modellvorhaben_rare_diseases_genome_sequencing.txt", expected_a),
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

see above

@Nicolai-vKuegelgen Nicolai-vKuegelgen merged commit 9d309a0 into main Feb 3, 2025
4 checks passed
@Nicolai-vKuegelgen Nicolai-vKuegelgen deleted the fix-sodar-api branch February 3, 2025 12:42
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants