Merge branch 'master' into bulk

bioconda · Jan 7, 2025 · 1859f6d · 1859f6d
2 parents 5d44004 + dc1b396
commit 1859f6d
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Showing 7 changed files with 31 additions and 22 deletions.
diff --git a/recipes/annosine2/meta.yaml b/recipes/annosine2/meta.yaml
@@ -1,16 +1,16 @@
 {% set name = "annosine2" %}
-{% set version = "2.0.7" %}
+{% set version = "2.0.8" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 94387b895e2b011125211039598b8c426124aa43be6915697243497eefb7fff8
+  sha256: 4c28864e86a65c145dd9f2d297bd0eb43dbcd36944b83205d1d29b50eadfc2c8
 
 build:
-  number: 1
+  number: 0
   entry_points:
     - AnnoSINE_v2 = AnnoSINE.AnnoSINE_v2:main
   script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"

diff --git a/recipes/mashtree/build.sh b/recipes/mashtree/build.sh
@@ -2,12 +2,12 @@
 
 set -x -e
 
-export INCLUDE_PATH="${BUILD_PREFIX}/include"
-export LIBRARY_PATH="${BUILD_PREFIX}/lib"
-export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${BUILD_PREFIX}/lib"
+export INCLUDE_PATH="${PREFIX}/include"
+export LIBRARY_PATH="${PREFIX}/lib"
+export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${PREFIX}/lib"
 
-export LDFLAGS="-L${BUILD_PREFIX}/lib"
-export CPPFLAGS="-I${BUILD_PREFIX}/include"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+export CPPFLAGS="${CPPFLAGS} -O3 -I${PREFIX}/include"
 
 
 mkdir -p $$PREFIX/bin
@@ -24,5 +24,5 @@ perl ./Build.PL
 perl ./Build manifest
 perl ./Build install --installdirs site
 
-chmod +x $PREFIX/bin/mashtre*
-chmod +x $PREFIX/bin/min_abundance*
+chmod 0755 $PREFIX/bin/mashtre*
+chmod 0755 $PREFIX/bin/min_abundance*
diff --git a/recipes/mashtree/meta.yaml b/recipes/mashtree/meta.yaml
@@ -11,9 +11,9 @@ source:
   sha256: {{ hash }}
 
 build:
-  number: 1
+  number: 2
   run_exports:
-    - {{ pin_subpackage('mashtree', max_pin='x.x') }}
+    - {{ pin_subpackage('mashtree', max_pin='x') }}
 
 requirements:
   build:
@@ -22,20 +22,21 @@ requirements:
     - perl
     - perl-module-build
     - perl-bioperl
-    - perl-dbd-sqlite >=1.58
   run:
     - perl
-    - perl-bioperl >=1.7.2
-    - perl-dbd-sqlite >=1.58
+    - perl-bioperl
     - perl-file-which
-    - mash >=1.1
+    - mash >=2
     - quicktree
 test:
   commands:
     - mashtree --version
 
 about:
   home: https://github.com/lskatz/mashtree
-  license: GPL-3.0
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
   license_file: LICENSE
-  summary: 'Create a tree using Mash distances'
+  summary: 'Create a tree using Mash distances.'
+  dev_url: "https://github.com/lskatz/mashtree"
+  doc_url: "https://github.com/lskatz/mashtree/blob/v{{ version }}/README.md"
diff --git a/recipes/methylmap/meta.yaml b/recipes/methylmap/meta.yaml
@@ -1,13 +1,13 @@
 {% set name = "methylmap" %}
-{% set version = "0.5.7" %}
+{% set version = "0.5.11" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: e7c9395fce7c4653c3a8028b6a43e4e484f02a4f0e960d9fa7a01fd755598ba9
+  sha256: a68f2ba68a4638d0c096e838deca88d58764210b0a0bc0a8f981ffe34b902208
 
 build:
   number: 0

diff --git a/recipes/mumemto/build.sh b/recipes/mumemto/build.sh
@@ -1,5 +1,7 @@
 #!/bin/bash
 
+set -xe
+
 mkdir build
 cd build
 cmake ..

diff --git a/recipes/mumemto/meta.yaml b/recipes/mumemto/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: 8ebdebebb41a13aa19553a8da89f1844a8fb8ee64e63ae17aa06b9dbb61fad01
 
 build:
-  number: 1
+  number: 2
   pkg_format: '.conda'
   run_exports:
     - {{ pin_subpackage(name, max_pin='x.x') }}
@@ -49,5 +49,8 @@ about:
   license_file: LICENSE
 
 extra:
+  additional-platforms:
+    - linux-aarch64
+    - osx-arm64
   recipe-maintainers:
     - vikshiv
diff --git a/recipes/suchtree/meta.yaml b/recipes/suchtree/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: c45af37beb1a210097151b807ccde9966c72a3cfa99ecfe80251bcc0a14f1f60
 
 build:
-  number: 0
+  number: 1
   run_exports:
     - {{ pin_subpackage( "suchtree", max_pin="x.x" ) }}
   script: "{{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation"
@@ -46,6 +46,9 @@ about:
   dev_url: https://github.com/ryneches/SuchTree/
 
 extra:
+  additional-platforms:
+    - linux-aarch64
+    - osx-arm64
   identifiers:
     - biotools:suchtree
     - doi:10.21105/joss.00678