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Collated alpha map #596
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Collated alpha map #596
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This function allows to compute the mean alpha diversity data at a given rarefaction depth.
Collated alpha diversity files can now be used with this script, the user is now able to specify a given depth to get the mean of the values added to the mapping file.
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add_alpha_to_mapping_file.pyis now capable of handling the output ofcollate_alpha.pyeither as a single file or multiple files. The script allows you to select a rarefaction depth from the alpha diversity data; the added values will be the mean of the multiple iterations available at that depth.The test data repository has been updated as well, see: caporaso-lab-graveyard/qiime_test_data#79.