update readme with paper link #506
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| name: CI | |
| on: | |
| pull_request: | |
| branches: [ main ] | |
| push: | |
| branches: [ main ] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| environment: 'Test CI' | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.11 | |
| - name: Install Poetry | |
| run: | | |
| curl -sSL https://install.python-poetry.org | POETRY_VERSION=1.7.1 python3 - | |
| - name: Install dependencies | |
| run: poetry install --all-extras | |
| - name: Run tests and generate coverage report | |
| run: | | |
| poetry run pytest --cov=biochatter --cov-report=xml test --ignore=./volumes | |
| poetry run coverage report | |
| shell: bash | |
| - name: Generate coverage badge | |
| if: (github.event_name == 'push' && github.ref == 'refs/heads/main') || (github.event_name == 'pull_request' && github.event.action == 'closed' && github.base_ref == 'refs/heads/main' && github.event.pull_request.merged == true) | |
| run: | | |
| poetry run coverage-badge -f -o docs/coverage/coverage.svg | |
| shell: bash | |
| - name: Commit changes | |
| if: (github.event_name == 'push' && github.ref == 'refs/heads/main') || (github.event_name == 'pull_request' && github.event.action == 'closed' && github.base_ref == 'refs/heads/main' && github.event.pull_request.merged == true) | |
| uses: s0/git-publish-subdir-action@develop | |
| env: | |
| REPO: self | |
| BRANCH: coverage | |
| FOLDER: docs/coverage | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |