Skip to content

v1.1.0
Compare
Choose a tag to compare
@bepoli bepoli released this 23 Aug 16:11
· 28 commits to main since this release
v1.1.0
e376d03
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.

What's Changed

  • Add option "--dumpEC" to write a log table with Equivalence Classes and UMI mismatch corrections (PR: #13)
  • Add options --min-bp-overlap and --min-fraction-overlap to set a minimum overlap between read and TE (PR: #14)
  • Merge 1.1.0-beta.2 (PR: #16)
    • Improve the TE-UMI deduplication by using directed graphs (inspired by umi-tools directional algorithm).
    • Use networkx to handle graphs.
    • Make the EM procedure compatible with the new deduplication strategy.
    • Make EM operations on a numpy matrix to increase performance.
  • Minor adjustments to docs and syntax (PR: #17)

Full Changelog: v1.0.3...v1.1.0

Assets 2
Loading