browser/tests: Change a sequence to have an Ig locus

bonsai-team · Jun 28, 2016 · 4bea338 · 4bea338
1 parent ef35512
commit 4bea338
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Showing 2 changed files with 7 additions and 10 deletions.
diff --git a/browser/test/test_multilocus.rb b/browser/test/test_multilocus.rb
@@ -29,7 +29,7 @@ def test_00_default_point_name
   end
 
   def test_00_germline
-    assert ($b.div(:id => 'info').span(:class => 'systemBoxNameMenu').text.include? 'TRA'), 'missing system TRA'
+    assert ($b.div(:id => 'info').span(:class => 'systemBoxNameMenu', :index => 1).text.include? 'TRA'), 'missing system TRA'
   end
 
   def test_00_legend_scatterplot

diff --git a/doc/analysis-example.vidjil b/doc/analysis-example.vidjil
@@ -510,18 +510,15 @@
       "id": "TGTGCTAGCAGTTTATGGGACAGGGGAGACACCCAGTACT"
     }, 
     {
-      "germline": "TRB", 
-      "name": "TRBV29*01 -5/5/-0 TRBD2*01 -3/2/-6 TRBJ2-5*01", 
-      "sequence": "YYGGGYYACGYAYAGCGGYGYTTYYCCTYTYTGYTYTGCYAAAYAACYYYYTGTGYCTYTGTGCYGYGTYCCCGGYCTGGGGGTGYYCCYGYCTTTGGGCYGGYCYGGCYCYGTGTYYGYYTYYAATGTYCYYCCYAG", 
+      "germline": "IGH",
+      "name": "IGHV3-9*01 7/CCCGGA/17 IGHJ6*02",
+      "sequence": "GGAGTCGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCACCCGGAGGTATGGACGTCTGGGGCCAAGGGACCCTGGTCACC",
       "top": 14, 
       "seg": {
         "5end": 92, 
-        "4end": 108, 
         "5start": 0, 
-        "3": "TRBJ2-5*01", 
-        "5": "TRBV29*01", 
-        "4": "TRBD2*01", 
-        "4start": 98, 
+        "3": "IGHJ6*02",
+        "5": "IGHV3-9*01",
         "3start": 111
       }, 
       "reads": [
@@ -533,7 +530,7 @@
           "2": 331
         }
       ], 
-      "id": "TGTGCYGYGTYCCCGGYCTGGGGGTGYYCCYGT"
+      "id": "CGCCAAGAACTCCCTGTATCTGCAAATG"
     }, 
     {
       "germline": "TRB",