fuse.py moved from server/ to tools/

Makefile

@@ -32,7 +32,7 @@ unit: all
 
 pytests:
 	@echo "*** Launching python tests..."
-	python server/fuse.py --test x
+	python tools/fuse.py --test x
 	@echo "*** All python tests passed"
 
 should: all

algo/tests/fuse-three-files.should_get

@@ -1,4 +1,4 @@
-!LAUNCH: python ../../server/fuse.py ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ; cat fused.vidjil
+!LAUNCH: python ../../tools/fuse.py ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ; cat fused.vidjil
 
 $ Fuse the three files
 2: ListWindows: .1000, 1000, 1000.

algo/tests/stanford-fuse.should_get

@@ -1,4 +1,4 @@
-!LAUNCH: ../../vidjil -G ../../germline/IGH ../../data/Stanford_S22.fasta ; python ../../server/fuse.py out/Stanford_S22.vidjil out/Stanford_S22.vidjil -o out/fused.data ; cat out/fused.data | sh format-json.sh
+!LAUNCH: ../../vidjil -G ../../germline/IGH ../../data/Stanford_S22.fasta ; python ../../tools/fuse.py out/Stanford_S22.vidjil out/Stanford_S22.vidjil -o out/fused.data ; cat out/fused.data | sh format-json.sh
 
 $ Points list
 f1:"point": [ "", "" ]

doc/browser.org

@@ -30,7 +30,7 @@ database computes these .vidjil files.
 Otherwise, such .vidjil files can be obtained:
  - from the command-line version of Vidjil (starting from
    =.fasta= or =.fastq= files, see [[http://git.vidjil.org/blob/master/doc/algo.org][algo.org]]).
-   To gather several .vidjil files, you have to use the [[http://git.vidjil.org/blob/master/server/fuse.py][fuse.py]] script
+   To gather several .vidjil files, you have to use the [[http://git.vidjil.org/blob/master/tools/fuse.py][fuse.py]] script
  - or by post-processing of other V(D)J analysis pipelines (contact us
    if you are interested)