[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
brainglobe · Feb 5, 2024 · 6d3287e · 6d3287e
1 parent 6c52ae8
commit 6d3287e
Show file tree

Hide file tree

Showing 7 changed files with 6 additions and 5 deletions.
diff --git a/bg_atlasgen/atlas_scripts/allen_mouse.py b/bg_atlasgen/atlas_scripts/allen_mouse.py
@@ -30,7 +30,7 @@ def create_atlas(working_dir, resolution):
         manifest=download_dir_path / "manifest.json",
         # downloaded files are stored relative to here
         resolution=resolution,
-        reference_space_key="annotation/ccf_2017"
+        reference_space_key="annotation/ccf_2017",
         # use the latest version of the CCF
     )
 

diff --git a/bg_atlasgen/atlas_scripts/example_mouse.py b/bg_atlasgen/atlas_scripts/example_mouse.py
@@ -30,7 +30,7 @@ def create_atlas(working_dir, resolution):
         manifest=download_dir_path / "manifest.json",
         # downloaded files are stored relative to here
         resolution=RES_UM,
-        reference_space_key="annotation/ccf_2017"
+        reference_space_key="annotation/ccf_2017",
         # use the latest version of the CCF
     )
 

diff --git a/bg_atlasgen/atlas_scripts/kim_mouse.py b/bg_atlasgen/atlas_scripts/kim_mouse.py
@@ -72,7 +72,7 @@ def create_atlas(working_dir, resolution):
         manifest=download_dir_path / "manifest.json",
         # downloaded files are stored relative to here
         resolution=resolution,
-        reference_space_key="annotation/ccf_2017"
+        reference_space_key="annotation/ccf_2017",
         # use the latest version of the CCF
     )
 

diff --git a/bg_atlasgen/atlas_scripts/osten_mouse.py b/bg_atlasgen/atlas_scripts/osten_mouse.py
@@ -69,7 +69,7 @@ def create_atlas(working_dir, resolution):
         manifest=download_dir_path / "manifest.json",
         # downloaded files are stored relative to here
         resolution=resolution,
-        reference_space_key="annotation/ccf_2017"
+        reference_space_key="annotation/ccf_2017",
         # use the latest version of the CCF
     )
 

diff --git a/bg_atlasgen/metadata_utils.py b/bg_atlasgen/metadata_utils.py
@@ -3,6 +3,7 @@
         . structures.csv
         . README.txt
 """
+
 import json
 import re
 from datetime import datetime

diff --git a/bg_atlasgen/validate_atlases.py b/bg_atlasgen/validate_atlases.py
@@ -1,6 +1,5 @@
 """Script to validate atlases"""
 
-
 import os
 from pathlib import Path
 

diff --git a/bg_atlasgen/volume_utils.py b/bg_atlasgen/volume_utils.py
@@ -2,6 +2,7 @@
     Code useful for dealing with volumetric data (e.g. allen annotation volume for the mouse atlas)
     extracting surfaces from volumetric data ....
 """
+
 try:
     from vedo import Volume
 except ModuleNotFoundError: