Skip to content

Commit

Permalink
deploy: e52d36b
Browse files Browse the repository at this point in the history
  • Loading branch information
ErinWeisbart committed Jan 28, 2025
1 parent c30aad9 commit 6a78f35
Show file tree
Hide file tree
Showing 2 changed files with 2 additions and 2 deletions.
2 changes: 1 addition & 1 deletion _sources/uploading_to_cpg.md
Original file line number Diff line number Diff line change
Expand Up @@ -69,7 +69,7 @@ aws s3 cp --recursive /Users/eweisbar/Batch8_profiles s3://staging-cellpainting-
Create `create_credentials.sh` file on your computer and [copy in the code from cytoskel](https://github.com/broadinstitute/cytoskel/blob/main/cytoskel/docs/access_cpg_staging.md#create-file-called-s3_credentialssh)).

Edit the code copied from cytoskel so that the `*` in the `--target` line matches your prefix.
e.g. `--target "s3://staging-cellpainting-gallery/*" \` becomes `--target "s3://staging-cellpainting-gallery/cpg0016-jump" \` for upload to `cpg0016-jump`.
e.g. `--target "s3://staging-cellpainting-gallery/*" \` becomes `--target "s3://staging-cellpainting-gallery/cpg0016-jump/*" \` for upload to `cpg0016-jump`.

>[!NOTE]
>If you are working on an institutional server without jq, run this step in your local computer only.
Expand Down
2 changes: 1 addition & 1 deletion uploading_to_cpg.html
Original file line number Diff line number Diff line change
Expand Up @@ -475,7 +475,7 @@ <h2>5. Prepare your AWS CLI data transfer commands<a class="headerlink" href="#p
<h2>6. Create <code class="docutils literal notranslate"><span class="pre">create_credentials.sh</span></code><a class="headerlink" href="#create-create-credentials-sh" title="Permalink to this heading">#</a></h2>
<p>Create <code class="docutils literal notranslate"><span class="pre">create_credentials.sh</span></code> file on your computer and <a class="reference external" href="https://github.com/broadinstitute/cytoskel/blob/main/cytoskel/docs/access_cpg_staging.md#create-file-called-s3_credentialssh">copy in the code from cytoskel</a>).</p>
<p>Edit the code copied from cytoskel so that the <code class="docutils literal notranslate"><span class="pre">*</span></code> in the <code class="docutils literal notranslate"><span class="pre">--target</span></code> line matches your prefix.
e.g. <code class="docutils literal notranslate"><span class="pre">--target</span> <span class="pre">&quot;s3://staging-cellpainting-gallery/*&quot;</span> <span class="pre">\</span></code> becomes <code class="docutils literal notranslate"><span class="pre">--target</span> <span class="pre">&quot;s3://staging-cellpainting-gallery/cpg0016-jump&quot;</span> <span class="pre">\</span></code> for upload to <code class="docutils literal notranslate"><span class="pre">cpg0016-jump</span></code>.</p>
e.g. <code class="docutils literal notranslate"><span class="pre">--target</span> <span class="pre">&quot;s3://staging-cellpainting-gallery/*&quot;</span> <span class="pre">\</span></code> becomes <code class="docutils literal notranslate"><span class="pre">--target</span> <span class="pre">&quot;s3://staging-cellpainting-gallery/cpg0016-jump/*&quot;</span> <span class="pre">\</span></code> for upload to <code class="docutils literal notranslate"><span class="pre">cpg0016-jump</span></code>.</p>
<blockquote>
<div><p>[!NOTE]
If you are working on an institutional server without jq, run this step in your local computer only.</p>
Expand Down

0 comments on commit 6a78f35

Please sign in to comment.