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broadinstitute · Jan 28, 2025 · aee56ec · aee56ec
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commit aee56ec
Showing 1 changed file with 0 additions and 3 deletions.
diff --git a/pipelines/skylab/atac/atac.wdl b/pipelines/skylab/atac/atac.wdl
@@ -784,10 +784,7 @@ task PeakCalling {
     chromsize_dict = pd.Series(chromsize_dict[1].values, index=chromsize_dict[0]).to_dict()
     # merge peaks and create peak matrix
     peaks = snap.tl.merge_peaks(atac_data_mod.uns['macs3'], chromsize_dict)
-    print(peaks)
     peak_matrix = snap.pp.make_peak_matrix(atac_data_mod, use_rep=peaks['Peaks'])
-    print(type(peak_matrix))
-    print(peak_matrix)
 
     print("Convert pl.DataFrame to pandas DataFrame")
     # Convert pl.DataFrame to pandas DataFrame