Releases: broadinstitute/warp
Releases · broadinstitute/warp
atac_v2.6.0
2.6.0
2025-01-21 (Date of Last Commit)
- Added reference_gtf_file to the output h5ad unstructured metadata
- Added the fragment file CSI index as a workflow output
UltimaGenomicsWholeGenomeGermline_v1.1.3
1.1.3
2024-12-05 (Date of Last Commit)
- Updated the name of the output for ReblockGVCFs; this does not affect this pipeline
SlideSeq_v3.4.8
3.4.8
2025-01-13 (Date of Last Commit)
- Added a boolean variable is_slidetags; this does not affect the outputs of the pipeline
- Added reference_gtf_file to the output h5ad unstructured metadata
ReblockGVCF_v2.4.0
2.4.0
2024-12-05 (Date of Last Commit)
- Updated output names for ReblockGVCF workflow from output_vcf and output_vcf_index to reblocked_gvcf and reblocked_gvcf_index respectively
Optimus_v7.9.1
7.9.1
2025-01-13 (Date of Last Commit)
-
Added a boolean variable is_slidetags; set to false by default, but set to true if the Slide-Tags pipeline is calling Optimus
-
Added reference_gtf_file to the output h5ad unstructured metadata
Multiome_v5.9.6
5.9.6
2025-01-21 (Date of Last Commit)
- Added a boolean variable is_slidetags; default is false but it is set to true if the Slide-Tags pipeline is calling Optimus
- Added reference_gtf_file to the output h5ad unstructured metadata
- Added the ATAC fragment file CSI index as high-level ATAC workflow output; this does not impact the Multiome workflow as Multiome already produces the csi index from ATAC
BuildIndices_v4.0.0
4.0.0
2025-01-17 (Date of Last Commit)
- Updated the WDL to include a new docker version 2.1.0 which has new python scripts for handling a custom marmoset GTF input
- Updated the WDL to run new marmoset scripts if the organism input is set to marmoset
BroadInternalUltimaGenomics_v1.1.3
1.1.3
2024-12-05 (Date of Last Commit)
- Updated the name of the output for ReblockGVCFs; this does not affect this pipeline
atac_develop
2.6.0
2025-01-21 (Date of Last Commit)
- Added reference_gtf_file to the output h5ad unstructured metadata
- Added the fragment file CSI index as a workflow output
Multiome_develop
5.9.6
2025-01-21 (Date of Last Commit)
- Added a boolean variable is_slidetags; default is false but it is set to true if the Slide-Tags pipeline is calling Optimus
- Added reference_gtf_file to the output h5ad unstructured metadata
- Added the ATAC fragment file CSI index as high-level ATAC workflow output; this does not impact the Multiome workflow as Multiome already produces the csi index from ATAC