Releases: broadinstitute/warp
Releases · broadinstitute/warp
BroadInternalImputation_v1.1.14
1.1.14
2024-11-04 (Date of Last Commit)
- Updated to GATK version 4.6.1.0
BroadInternalArrays_v1.1.14
1.1.14
2024-11-04 (Date of Last Commit)
- Updated to GATK version 4.6.1.0
Arrays_v2.6.30
2.6.30
2024-11-04 (Date of Last Commit)
- Updated to GATK version 4.6.1.0
AnnotationFiltration_v1.2.7
1.2.7
2024-11-04 (Date of Last Commit)
- Updated to GATK version 4.6.1.0
atac_v2.4.0
2.4.0
2024-10-23 (Date of Last Commit)
- Added a new input parameter for atac_expected_cells, which describes the numnber of cells used for the library preparation
- Updated the ATAC library CSV to be consistent in file naming convention and to have similar case for metric names to the Optimus workflow library CSV
- Added a new metric to the ATAC library CSV to calculate percent_target, which is the number of estimated cells by SnapATAC2 divided by expected_cells input
- Updated the ATAC workflow so that the output fragment file is bgzipped by default
- Updated memory settings for PairedTag; does not impact the ATAC workflow
WholeGenomeReprocessing_v3.3.2
3.3.2
2024-10-28 (Date of Last Commit)
- Updated the docker in the ValidateVCF task; this does not affect this pipeline
WholeGenomeGermlineSingleSample_v3.3.2
3.3.2
2024-10-28 (Date of Last Commit)
- Updated the docker in the ValidateVCF task; this does not affect this pipeline
VariantCalling_v2.2.3
2.2.3
2024-10-28 (Date of Last Commit)
- Updated the docker in the ValidateVCF task; this does not affect this pipeline
UltimaGenomicsWholeGenomeGermline_v1.1.1
1.1.1
2024-10-28 (Date of Last Commit)
- Updated the docker in the ValidateVCF task; this does not affect this pipeline
UltimaGenomicsWholeGenomeCramOnly_v1.0.22
1.0.22
2024-10-28 (Date of Last Commit)
- Updated the docker in the ValidateVCF task; this does not affect this pipeline