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Feat: oscar pipeline#8

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tuanpham96 wants to merge 14 commits intomainbrown-ccv/MultiSession:mainfrom feat/oscar-pipelinebrown-ccv/MultiSession:feat/oscar-pipelineCopy head branch name to clipboard

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Commits on Dec 14, 2023

• update from Ford

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• add pipeline mkdir-moco-deepcad-suite2p

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• env: fix typos in deepcad

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• add roicat to pipeline

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Commits on Dec 18, 2023

• env: fix deepcad env file

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Commits on Jan 19, 2024

• env: update oscar module name and path

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Commits on Jan 22, 2024

• feat: allow specify inp/out dir pattern + account for cropped background images

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• nb: add standalone roicat nb and inspect output nb

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Commits on Jan 31, 2024

• fix: oscar conda env path

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• helpers: add nb to convert binary file to tiff

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Commits on Feb 18, 2024

• helpers: add nb to convert 2-chan tiff from flowreg to suite2p accepted tiff dimension order

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• helpers: add nb to refine roicat output

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Commits on Jul 16, 2024

• fix: issue#9 for refinement notebook

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• fix: index for global_roi_colors + refactor save

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