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remove collection 2458.
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This is the reference tissue project collection, and a submission (12098) has
a genomics sample file that has tabs, not spaces. The corresponding issue in
the ndasynapse Python package is bsmn/ndasynapse#39.
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kdaily committed Nov 26, 2019
1 parent 90f7c71 commit 4210e83
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Showing 2 changed files with 2 additions and 2 deletions.
2 changes: 1 addition & 1 deletion run-live-manifests.sh
Original file line number Diff line number Diff line change
Expand Up @@ -10,4 +10,4 @@ aws ssm get-parameters --names nda-config --with-decryption --region us-east-1 -

echo "Running ndasynapse" $(query-nda --version) > /dev/stderr

manifest_guid_data.py --config /root/ndaconfig.json --collection_id 2458 2960 2961 2962 2963 2964 2965 2966 2967 2968 --manifest_type ${manifest_type} > /tmp/nda-manifests-${manifest_type}-LIVE.csv && synapse store --noForceVersion --parentId syn20858271 /tmp/nda-manifests-${manifest_type}-LIVE.csv;
manifest_guid_data.py --config /root/ndaconfig.json --collection_id 2960 2961 2962 2963 2964 2965 2966 2967 2968 --manifest_type ${manifest_type} > /tmp/nda-manifests-${manifest_type}-LIVE.csv && synapse store --noForceVersion --parentId syn20858271 /tmp/nda-manifests-${manifest_type}-LIVE.csv;
2 changes: 1 addition & 1 deletion run-original-manifests.sh
Original file line number Diff line number Diff line change
Expand Up @@ -10,4 +10,4 @@ aws ssm get-parameters --names nda-config --with-decryption --region us-east-1 -

echo "Running ndasynapse" $(query-nda --version) > /dev/stderr

query-nda --config /root/ndaconfig.json get-collection-manifests --collection_id 2458 2960 2961 2962 2963 2964 2965 2966 2967 2968 --manifest_type ${manifest_type} > /tmp/nda-manifests-${manifest_type}-ORIGINAL.csv && synapse store --noForceVersion --parentId syn20858272 /tmp/nda-manifests-${manifest_type}-ORIGINAL.csv
query-nda --config /root/ndaconfig.json get-collection-manifests --collection_id 2960 2961 2962 2963 2964 2965 2966 2967 2968 --manifest_type ${manifest_type} > /tmp/nda-manifests-${manifest_type}-ORIGINAL.csv && synapse store --noForceVersion --parentId syn20858272 /tmp/nda-manifests-${manifest_type}-ORIGINAL.csv

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