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bud-graziano committed Jun 11, 2021
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Expand Up @@ -36,12 +36,12 @@ A basic example of how to use RosettaSurf inside RosettaScript:



This part of the repository contains computational scripts. Data presented in the paper is stored in a separate [data repository]() at Zenodo. To follow the data analysis, please integrate the data repository into the top-level. Both repositories have a similar structure and contain the following sections:
This part of the repository contains computational scripts. Data presented in the paper is stored in a separate data repository [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4917367.svg)](https://doi.org/10.5281/zenodo.4917367). To follow the data analysis, please integrate the data repository into the top-level. Both repositories have a similar structure and contain the following sections:

* **interface recovery** referring to section *Protein interface sequence recovery* in the paper.
* **interleukin benchmark** referring to section *Computational SSM screening to improve protein binding* in the paper.
* **rsv site 0 design** referring to section *Surface-centric design of a novel RSV site 0 immunogen* in the paper.
* **single amino acid recovery** referring to section *Single amino acid recovery* in the paper.
* **surface weight optimization** referring to section *RosettaSurf framework* in the paper.

The `RosettaSurf_benchmark.ipynb` Jupyter Notebook contains the data analysis and data figures shown in the paper.
The `RosettaSurf_benchmark.ipynb` Jupyter Notebook contains the data analysis and data figures shown in the paper.

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