Add end-to-end tests for custom init columns in cna and structural va…

…riant tables

end-to-end-test/local/specs/init-columns-in-cna-tables.spec.js

@@ -0,0 +1,61 @@
+const assert = require('assert');
+const {
+    goToUrlAndSetLocalStorageWithProperty,
+} = require('../../shared/specUtils');
+const { waitForTable } = require('./namespace-columns-utils');
+
+const CBIOPORTAL_URL = process.env.CBIOPORTAL_URL.replace(/\/$/, '');
+
+const DEFAULT_COLS = {
+    GENE: 'Gene',
+    CNA: 'CNA',
+    ANNOTATION: 'Annotation',
+    CYTOBAND: 'Cytoband',
+    COHORT: 'Cohort',
+};
+
+describe('namespace columns in cna tables', function() {
+    describe('patient view', () => {
+        const patientViewUrl = `${CBIOPORTAL_URL}/patient?studyId=study_es_0&caseId=TCGA-A2-A04U`;
+        const patientCnaTable = 'patientview-copynumber-table';
+
+        it('shows default columns when property is not set', () => {
+            goToUrlAndSetLocalStorageWithProperty(patientViewUrl, true, {});
+            waitForTable(patientCnaTable);
+            assert(defaultColumnsAreDisplayed());
+        });
+
+        it('shows selected columns when property is set', () => {
+            goToUrlAndSetLocalStorageWithProperty(patientViewUrl, true, {
+                skin_patient_view_copy_number_table_columns_show_on_init:
+                    'Gene,Annotation,Gene panel',
+            });
+            waitForTable(patientCnaTable);
+            assert(columnIsDisplayed(DEFAULT_COLS.GENE));
+            assert(columnIsNotDisplayed(DEFAULT_COLS.CNA));
+            assert(columnIsDisplayed(DEFAULT_COLS.ANNOTATION));
+            assert(columnIsNotDisplayed(DEFAULT_COLS.CYTOBAND));
+            assert(columnIsNotDisplayed(DEFAULT_COLS.COHORT));
+            assert(columnIsDisplayed('Gene panel')); //Failing
+        });
+    });
+});
+
+defaultColumnsAreDisplayed = () => {
+    return (
+        $("//span[text() = '" + DEFAULT_COLS.GENE + "']").isDisplayed() &&
+        $("//span[text() = '" + DEFAULT_COLS.CNA + "']").isDisplayed() &&
+        $("//span[text() = '" + DEFAULT_COLS.ANNOTATION + "']").isDisplayed() &&
+        $("//span[text() = '" + DEFAULT_COLS.CYTOBAND + "']").isDisplayed() &&
+        $("//span[text() = '" + DEFAULT_COLS.COHORT + "']").isDisplayed() &&
+        !$("//span[text() = 'Gene panel']").isDisplayed()
+    );
+};
+
+function columnIsDisplayed(column) {
+    return $("//span[text() = '" + column + "']").isDisplayed();
+}
+
+function columnIsNotDisplayed(column) {
+    return !$("//span[text() = '" + column + "']").isDisplayed();
+}

end-to-end-test/local/specs/init-columns-in-struct-var-tables.spec.js

@@ -0,0 +1,74 @@
+const assert = require('assert');
+const {
+    goToUrlAndSetLocalStorageWithProperty,
+} = require('../../shared/specUtils');
+const { waitForTable } = require('./namespace-columns-utils');
+
+const CBIOPORTAL_URL = process.env.CBIOPORTAL_URL.replace(/\/$/, '');
+
+const DEFAULT_COLS = {
+    GENE_1: 'Gene 1',
+    GENE_2: 'Gene 2',
+    STATUS: 'Status',
+    ANNOTATION: 'Annotation',
+    VARIANT_CLASS: 'Variant Class',
+    EVENT_INFO: 'Event Info',
+    CONNECTION_TYPE: 'Connection Type',
+};
+
+describe('namespace columns in structural variant tables', function() {
+    describe('patient view', () => {
+        const patientViewUrl = `${CBIOPORTAL_URL}/patient?studyId=study_es_0&caseId=TCGA-A2-A04P`;
+        const patientStructVarTable = 'patientview-structural-variant-table';
+
+        it('shows default columns when property is not set', () => {
+            goToUrlAndSetLocalStorageWithProperty(patientViewUrl, true, {});
+            waitForTable(patientStructVarTable);
+
+            assert(defaultColumnsAreDisplayed());
+        });
+
+        it('shows selected columns when property is set', () => {
+            goToUrlAndSetLocalStorageWithProperty(patientViewUrl, true, {
+                skin_patient_view_structural_variant_table_columns_show_on_init:
+                    'Gene 1,Annotation,Breakpoint Type',
+            });
+            waitForTable(patientStructVarTable);
+            assert(columnIsDisplayed(DEFAULT_COLS.GENE_1));
+            assert(columnIsNotDisplayed(DEFAULT_COLS.GENE_2));
+            assert(columnIsNotDisplayed(DEFAULT_COLS.STATUS));
+            assert(columnIsDisplayed(DEFAULT_COLS.ANNOTATION));
+            assert(columnIsNotDisplayed(DEFAULT_COLS.VARIANT_CLASS));
+            assert(columnIsNotDisplayed(DEFAULT_COLS.EVENT_INFO));
+            assert(columnIsNotDisplayed(DEFAULT_COLS.CONNECTION_TYPE));
+            assert(columnIsDisplayed('Breakpoint Type'));
+        });
+    });
+});
+
+defaultColumnsAreDisplayed = () => {
+    return (
+        $("//span[text() = '" + DEFAULT_COLS.GENE_1 + "']").waitForDisplayed({
+            timeout: 10000,
+        }) &&
+        $("//span[text() = '" + DEFAULT_COLS.GENE_2 + "']").isDisplayed() &&
+        $("//span[text() = '" + DEFAULT_COLS.STATUS + "']").isDisplayed() &&
+        $("//span[text() = '" + DEFAULT_COLS.ANNOTATION + "']").isDisplayed() &&
+        $(
+            "//span[text() = '" + DEFAULT_COLS.VARIANT_CLASS + "']"
+        ).isDisplayed() &&
+        $("//span[text() = '" + DEFAULT_COLS.EVENT_INFO + "']").isDisplayed() &&
+        $(
+            "//span[text() = '" + DEFAULT_COLS.CONNECTION_TYPE + "']"
+        ).isDisplayed() &&
+        !$("//span[text() = 'Breakpoint Type']").isDisplayed()
+    );
+};
+
+function columnIsDisplayed(column) {
+    return $("//span[text() = '" + column + "']").isDisplayed();
+}
+
+function columnIsNotDisplayed(column) {
+    return !$("//span[text() = '" + column + "']").isDisplayed();
+}