grab new stable - copyright

cBioPortal · Mar 18, 2015 · 4cb220c · 4cb220c
2 parents 9f5cf01 + fc22a1a
commit 4cb220c
Show file tree

Hide file tree

Showing 641 changed files with 19,095 additions and 10,468 deletions.
diff --git a/business/src/main/java/org/mskcc/cbio/portal/model/AttributeDatatype.java b/business/src/main/java/org/mskcc/cbio/portal/model/AttributeDatatype.java
@@ -1,19 +1,35 @@
-/** Copyright (c) 2014 Memorial Sloan-Kettering Cancer Center.
+/*
+ * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center.
  *
- * This library is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
- * MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.  The software and
- * documentation provided hereunder is on an "as is" basis, and
- * Memorial Sloan-Kettering Cancer Center 
- * has no obligations to provide maintenance, support,
- * updates, enhancements or modifications.  In no event shall
- * Memorial Sloan-Kettering Cancer Center
- * be liable to any party for direct, indirect, special,
- * incidental or consequential damages, including lost profits, arising
- * out of the use of this software and its documentation, even if
- * Memorial Sloan-Kettering Cancer Center 
- * has been advised of the possibility of such damage.
+ * This library is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS
+ * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder
+ * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no
+ * obligations to provide maintenance, support, updates, enhancements or
+ * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be
+ * liable to any party for direct, indirect, special, incidental or
+ * consequential damages, including lost profits, arising out of the use of this
+ * software and its documentation, even if Memorial Sloan-Kettering Cancer
+ * Center has been advised of the possibility of such damage.
+ */
+
+/*
+ * This file is part of cBioPortal.
+ *
+ * cBioPortal is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as
+ * published by the Free Software Foundation, either version 3 of the
+ * License.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */
+
 package org.mskcc.cbio.portal.model;
 
 public enum AttributeDatatype

diff --git a/business/src/main/java/org/mskcc/cbio/portal/model/AttributeMetadata.java b/business/src/main/java/org/mskcc/cbio/portal/model/AttributeMetadata.java
@@ -1,19 +1,35 @@
-/** Copyright (c) 2014 Memorial Sloan-Kettering Cancer Center.
+/*
+ * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center.
  *
- * This library is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
- * MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.  The software and
- * documentation provided hereunder is on an "as is" basis, and
- * Memorial Sloan-Kettering Cancer Center 
- * has no obligations to provide maintenance, support,
- * updates, enhancements or modifications.  In no event shall
- * Memorial Sloan-Kettering Cancer Center
- * be liable to any party for direct, indirect, special,
- * incidental or consequential damages, including lost profits, arising
- * out of the use of this software and its documentation, even if
- * Memorial Sloan-Kettering Cancer Center 
- * has been advised of the possibility of such damage.
+ * This library is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS
+ * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder
+ * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no
+ * obligations to provide maintenance, support, updates, enhancements or
+ * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be
+ * liable to any party for direct, indirect, special, incidental or
+ * consequential damages, including lost profits, arising out of the use of this
+ * software and its documentation, even if Memorial Sloan-Kettering Cancer
+ * Center has been advised of the possibility of such damage.
+ */
+
+/*
+ * This file is part of cBioPortal.
+ *
+ * cBioPortal is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as
+ * published by the Free Software Foundation, either version 3 of the
+ * License.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */
+
 package org.mskcc.cbio.portal.model;
 
 import java.io.Serializable;

diff --git a/business/src/main/java/org/mskcc/cbio/portal/model/Entity.java b/business/src/main/java/org/mskcc/cbio/portal/model/Entity.java
@@ -1,19 +1,35 @@
-/** Copyright (c) 2014 Memorial Sloan-Kettering Cancer Center.
+/*
+ * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center.
  *
- * This library is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
- * MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.  The software and
- * documentation provided hereunder is on an "as is" basis, and
- * Memorial Sloan-Kettering Cancer Center 
- * has no obligations to provide maintenance, support,
- * updates, enhancements or modifications.  In no event shall
- * Memorial Sloan-Kettering Cancer Center
- * be liable to any party for direct, indirect, special,
- * incidental or consequential damages, including lost profits, arising
- * out of the use of this software and its documentation, even if
- * Memorial Sloan-Kettering Cancer Center 
- * has been advised of the possibility of such damage.
+ * This library is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS
+ * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder
+ * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no
+ * obligations to provide maintenance, support, updates, enhancements or
+ * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be
+ * liable to any party for direct, indirect, special, incidental or
+ * consequential damages, including lost profits, arising out of the use of this
+ * software and its documentation, even if Memorial Sloan-Kettering Cancer
+ * Center has been advised of the possibility of such damage.
+ */
+
+/*
+ * This file is part of cBioPortal.
+ *
+ * cBioPortal is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as
+ * published by the Free Software Foundation, either version 3 of the
+ * License.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */
+
 package org.mskcc.cbio.portal.model;
 
 import java.io.Serializable;

diff --git a/business/src/main/java/org/mskcc/cbio/portal/model/EntityAttribute.java b/business/src/main/java/org/mskcc/cbio/portal/model/EntityAttribute.java
@@ -1,18 +1,33 @@
-/** Copyright (c) 2014 Memorial Sloan-Kettering Cancer Center.
+/*
+ * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center.
  *
- * This library is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
- * MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.  The software and
- * documentation provided hereunder is on an "as is" basis, and
- * Memorial Sloan-Kettering Cancer Center 
- * has no obligations to provide maintenance, support,
- * updates, enhancements or modifications.  In no event shall
- * Memorial Sloan-Kettering Cancer Center
- * be liable to any party for direct, indirect, special,
- * incidental or consequential damages, including lost profits, arising
- * out of the use of this software and its documentation, even if
- * Memorial Sloan-Kettering Cancer Center 
- * has been advised of the possibility of such damage.
+ * This library is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS
+ * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder
+ * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no
+ * obligations to provide maintenance, support, updates, enhancements or
+ * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be
+ * liable to any party for direct, indirect, special, incidental or
+ * consequential damages, including lost profits, arising out of the use of this
+ * software and its documentation, even if Memorial Sloan-Kettering Cancer
+ * Center has been advised of the possibility of such damage.
+ */
+
+/*
+ * This file is part of cBioPortal.
+ *
+ * cBioPortal is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as
+ * published by the Free Software Foundation, either version 3 of the
+ * License.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */
 
 package org.mskcc.cbio.portal.model;

diff --git a/business/src/main/java/org/mskcc/cbio/portal/model/EntityLink.java b/business/src/main/java/org/mskcc/cbio/portal/model/EntityLink.java
@@ -1,19 +1,35 @@
-/** Copyright (c) 2014 Memorial Sloan-Kettering Cancer Center.
+/*
+ * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center.
  *
- * This library is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
- * MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.  The software and
- * documentation provided hereunder is on an "as is" basis, and
- * Memorial Sloan-Kettering Cancer Center 
- * has no obligations to provide maintenance, support,
- * updates, enhancements or modifications.  In no event shall
- * Memorial Sloan-Kettering Cancer Center
- * be liable to any party for direct, indirect, special,
- * incidental or consequential damages, including lost profits, arising
- * out of the use of this software and its documentation, even if
- * Memorial Sloan-Kettering Cancer Center 
- * has been advised of the possibility of such damage.
+ * This library is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS
+ * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder
+ * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no
+ * obligations to provide maintenance, support, updates, enhancements or
+ * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be
+ * liable to any party for direct, indirect, special, incidental or
+ * consequential damages, including lost profits, arising out of the use of this
+ * software and its documentation, even if Memorial Sloan-Kettering Cancer
+ * Center has been advised of the possibility of such damage.
+ */
+
+/*
+ * This file is part of cBioPortal.
+ *
+ * cBioPortal is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as
+ * published by the Free Software Foundation, either version 3 of the
+ * License.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */
+
 package org.mskcc.cbio.portal.model;
 
 import java.io.Serializable;

diff --git a/business/src/main/java/org/mskcc/cbio/portal/model/EntityType.java b/business/src/main/java/org/mskcc/cbio/portal/model/EntityType.java
@@ -1,19 +1,35 @@
-/** Copyright (c) 2014 Memorial Sloan-Kettering Cancer Center.
+/*
+ * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center.
  *
- * This library is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
- * MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.  The software and
- * documentation provided hereunder is on an "as is" basis, and
- * Memorial Sloan-Kettering Cancer Center 
- * has no obligations to provide maintenance, support,
- * updates, enhancements or modifications.  In no event shall
- * Memorial Sloan-Kettering Cancer Center
- * be liable to any party for direct, indirect, special,
- * incidental or consequential damages, including lost profits, arising
- * out of the use of this software and its documentation, even if
- * Memorial Sloan-Kettering Cancer Center 
- * has been advised of the possibility of such damage.
+ * This library is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS
+ * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder
+ * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no
+ * obligations to provide maintenance, support, updates, enhancements or
+ * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be
+ * liable to any party for direct, indirect, special, incidental or
+ * consequential damages, including lost profits, arising out of the use of this
+ * software and its documentation, even if Memorial Sloan-Kettering Cancer
+ * Center has been advised of the possibility of such damage.
+ */
+
+/*
+ * This file is part of cBioPortal.
+ *
+ * cBioPortal is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as
+ * published by the Free Software Foundation, either version 3 of the
+ * License.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */
+
 package org.mskcc.cbio.portal.model;
 
 public enum EntityType

diff --git a/business/src/main/java/org/mskcc/cbio/portal/persistence/EntityAttributeMapper.java b/business/src/main/java/org/mskcc/cbio/portal/persistence/EntityAttributeMapper.java
@@ -1,19 +1,35 @@
-/** Copyright (c) 2014 Memorial Sloan-Kettering Cancer Center.
+/*
+ * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center.
  *
- * This library is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
- * MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.  The software and
- * documentation provided hereunder is on an "as is" basis, and
- * Memorial Sloan-Kettering Cancer Center 
- * has no obligations to provide maintenance, support,
- * updates, enhancements or modifications.  In no event shall
- * Memorial Sloan-Kettering Cancer Center
- * be liable to any party for direct, indirect, special,
- * incidental or consequential damages, including lost profits, arising
- * out of the use of this software and its documentation, even if
- * Memorial Sloan-Kettering Cancer Center 
- * has been advised of the possibility of such damage.
+ * This library is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS
+ * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder
+ * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no
+ * obligations to provide maintenance, support, updates, enhancements or
+ * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be
+ * liable to any party for direct, indirect, special, incidental or
+ * consequential damages, including lost profits, arising out of the use of this
+ * software and its documentation, even if Memorial Sloan-Kettering Cancer
+ * Center has been advised of the possibility of such damage.
+ */
+
+/*
+ * This file is part of cBioPortal.
+ *
+ * cBioPortal is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as
+ * published by the Free Software Foundation, either version 3 of the
+ * License.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */
+
 package org.mskcc.cbio.portal.persistence;
 
 import org.mskcc.cbio.portal.model.*;

diff --git a/business/src/main/java/org/mskcc/cbio/portal/persistence/EntityMapper.java b/business/src/main/java/org/mskcc/cbio/portal/persistence/EntityMapper.java
@@ -1,19 +1,35 @@
-/** Copyright (c) 2014 Memorial Sloan-Kettering Cancer Center.
+/*
+ * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center.
  *
- * This library is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
- * MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.  The software and
- * documentation provided hereunder is on an "as is" basis, and
- * Memorial Sloan-Kettering Cancer Center 
- * has no obligations to provide maintenance, support,
- * updates, enhancements or modifications.  In no event shall
- * Memorial Sloan-Kettering Cancer Center
- * be liable to any party for direct, indirect, special,
- * incidental or consequential damages, including lost profits, arising
- * out of the use of this software and its documentation, even if
- * Memorial Sloan-Kettering Cancer Center 
- * has been advised of the possibility of such damage.
+ * This library is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS
+ * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder
+ * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no
+ * obligations to provide maintenance, support, updates, enhancements or
+ * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be
+ * liable to any party for direct, indirect, special, incidental or
+ * consequential damages, including lost profits, arising out of the use of this
+ * software and its documentation, even if Memorial Sloan-Kettering Cancer
+ * Center has been advised of the possibility of such damage.
+ */
+
+/*
+ * This file is part of cBioPortal.
+ *
+ * cBioPortal is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as
+ * published by the Free Software Foundation, either version 3 of the
+ * License.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */
+
 package org.mskcc.cbio.portal.persistence;
 
 import org.mskcc.cbio.portal.model.*;