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Update validate-data.yml
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Download and install core module to validate data
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JREastonMarks committed Nov 6, 2023
1 parent f64cd25 commit ef669c6
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8 changes: 8 additions & 0 deletions .github/workflows/validate-data.yml
Original file line number Diff line number Diff line change
Expand Up @@ -9,11 +9,19 @@ jobs:
uses: actions/checkout@v2
with:
path: ./cbioportal
- name: 'Download core module'
working-directory: ./cbioportal
run: |
wget
- name: 'Validate tests'
working-directory: ./cbioportal
run: |
docker run -v ${PWD}:/cbioportal python:3.6 /bin/sh -c '
cd /cbioportal &&
wget https://github.com/cBioPortal/cbioportal-core/releases/download/1.0.1/core-1.0.1.jar -P core/ &&
cd core &&
jar -xf core-1.0.1.jar &&
cd .. &&
pip install -r requirements.txt &&
export PYTHONPATH=/cbioportal/core/src/main/scripts &&
cd /cbioportal/core/src/test/scripts/ &&
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