fix validateStudies.py path

cBioPortal · Feb 29, 2024 · 8d2002f · 8d2002f · inodb · Feb 29, 2024
1 parent 90288fb
commit 8d2002f
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/.circleci/validate_all_studies.sh b/.circleci/validate_all_studies.sh
@@ -11,7 +11,7 @@ git lfs pull -I "public"
 num_studies=${#list_of_study_dirs[@]}
 
 test_reports_location="$HOME/test-reports"
-validation_command="$HOME/cbioportal/core/src/main/scripts/importer/./validateStudies.py -d $HOME/repo/public/ -p $HOME/repo/.circleci/portalinfo -html $test_reports_location"
+validation_command="$HOME/cbioportal-core/src/main/resources/resources/scripts/importer/./validateStudies.py -d $HOME/repo/public/ -p $HOME/repo/.circleci/portalinfo -html $test_reports_location"
 echo $'\nExecuting: '; echo $validation_command
 if sh -c "$validation_command" ; then
     echo "Tests passed successfully"

diff --git a/.circleci/validate_changed_studies.sh b/.circleci/validate_changed_studies.sh
@@ -56,13 +56,13 @@ if [[ $num_studies > 0 ]]; then
       # fi
       # append the first study
       if [ "$validation_command" = "" ] ; then
-        validation_command="($HOME/cbioportal-core/src/main/scripts/importer/./validateStudies.py -d $HOME/repo/ -l $study -p $HOME/repo/.circleci/portalinfo -html $test_reports_location/$study"
+        validation_command="($HOME/cbioportal-core/src/main/resources/resources/resources/scripts/importer/./validateStudies.py -d $HOME/repo/ -l $study -p $HOME/repo/.circleci/portalinfo -html $test_reports_location/$study"
       else
         # run each validation individually in the background
         if [ $mod = 0 ] ; then
-          validation_command="${validation_command}) & ($HOME/cbioportal-core/src/main/scripts/importer/./validateStudies.py -d $HOME/repo/ -l $study -p $HOME/repo/.circleci/portalinfo -html $test_reports_location/$study"
+          validation_command="${validation_command}) & ($HOME/cbioportal-core/src/main/resources/resources/resources/scripts/importer/./validateStudies.py -d $HOME/repo/ -l $study -p $HOME/repo/.circleci/portalinfo -html $test_reports_location/$study"
         else
-          validation_command="${validation_command} ; $HOME/cbioportal-core/src/main/scripts/importer/./validateStudies.py -d $HOME/repo/ -l $study -p $HOME/repo/.circleci/portalinfo -html $test_reports_location/$study"
+          validation_command="${validation_command} ; $HOME/cbioportal-core/src/main/resources/resources/resources/scripts/importer/./validateStudies.py -d $HOME/repo/ -l $study -p $HOME/repo/.circleci/portalinfo -html $test_reports_location/$study"
         fi
       fi
   done