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in filename changes doc refer to transcript docs
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inodb authored Dec 16, 2022
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Expand Up @@ -68,4 +68,4 @@ Methylation | data_methylation_genebodies_hmEPIC.txt | data_methylation_genebodi

Some of the filename updates here are just case changes. All the filenames were lowercased for uniformity.

The uniprot isoform overrides maf was removed from all studies. The mskcc overrides maf was renamed to `data_mutations.txt` for simplicity and will be used for import.
The uniprot isoform overrides maf was removed from all studies. The mskcc overrides maf was renamed to `data_mutations.txt` for simplicity and will be used for import. Read more about the transcript assignments [here](https://docs.cbioportal.org/mutation-data-transcript-annotation/#transcript-assignment).

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