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Update validation_stress_paper.ipynb
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jo-mueller authored Aug 21, 2024
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4 changes: 2 additions & 2 deletions docs/03_glossary/02_stresses/02_cell_stresses.md
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### Finding the Extrema on the Deformed Surface

To identify the extreme points (maxima and minima) on the deformed surface, we use a method called surface triangulation on the 5810 Lebedev nodes that represent the surface. Two points are considered neighbors if they are connected by an edge.
To identify the extreme points (maxima and minima) on the deformed surface, we use a method called surface triangulation on the 5810 Lebedev nodes that represent the surface. Two points are considered neighbors if they are connected by an edge.

- **Local maxima** are points where the value of cellular stress is greater than or equal to the values of all their neighboring points.
- **Local minima** are points where the value of cellular stress is less than or equal to the values of all their neighboring points.

The extrema stresses (or adjacent extrema stresses) are obtained by calculating the difference in cell-scale stresses between maxima and minima (or between adjacent maxima and minima).

Calculating these stresses is part of the [comprehensive stress quantification workflow](toolboxes:analyze_everything)=
Calculating these stresses is part of the [comprehensive stress quantification workflow](toolboxes:analyze_everything)=
2 changes: 1 addition & 1 deletion docs/03_glossary/02_stresses/Readme.md
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Understanding the shape of the droplet can help us to understand the prevalence of local and more global forces in a tissue. We differenttiate multiple types of stresses, the definition of which shall be explained in a bbit more detail in this chapter.

- [Tissue stresses](glossary:stresses:tissue_stresses)
- [Cell stresses](glossary:stresses:cell_stresses)
- [Cell stresses](glossary:stresses:cell_stresses)
1,399 changes: 670 additions & 729 deletions docs/04_FAQ/validation/validation_stress_paper.ipynb

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