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Benchmarking#66

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nqgurevich wants to merge 18 commits intocampbio:develcampbio/musicatk:develfrom nqgurevich:develnqgurevich/musicatk:develCopy head branch name to clipboard

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Commits on Apr 9, 2024

• Documentation updates and adjustments for umap failures

  

  Natasha Gurevich

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  Natasha Gurevich

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• Separation of comparison table generation and comparison plotting

  

  Natasha Gurevich

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  Natasha Gurevich

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Commits on Apr 16, 2024

• create_musica expanded to be compatible with count table input

  

  Natasha Gurevich

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  Natasha Gurevich

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Commits on Apr 18, 2024

• create_musica comments

  

  Natasha Gurevich

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  Natasha Gurevich

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Commits on May 6, 2024

• Separate create_musica into two functions

  

  Natasha Gurevich

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  Natasha Gurevich

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• Documentation updates for create_musica function separation

  

  Natasha Gurevich

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Commits on May 14, 2024

• Adding synthetic breast cancer data for benchmarking

  

  Natasha Gurevich

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• Adding synthetic breast data for becnhmarking, with documentation

  

  Natasha Gurevich

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Commits on May 21, 2024

• create_musica_from_counts compatible with DBS

  

  Natasha Gurevich

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Commits on Jun 11, 2024

• Removing deconstructSigs

  

  Natasha Gurevich

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• Documentation updates to correct warnings

  

  Natasha Gurevich

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Commits on Jun 17, 2024

• Benchmarking functions, sample data, and documentation

  

  Natasha Gurevich

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  Natasha Gurevich

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Commits on Jun 25, 2024

• Indel plotting order correction

  

  Natasha Gurevich

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• Benchmarking tutorial and other tutorial updates

  

  Natasha Gurevich

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• Benchmarking bug fixes and new predict_and_benchmark function

  

  Natasha Gurevich

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Commits on Jun 28, 2024

• Updates to return structure of benchmark_plot_composite_exposures and benchmark_plot_duplicate_exposures

  

  Natasha Gurevich

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  Natasha Gurevich

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Commits on Jul 2, 2024

• Merge branch 'devel' into devel

  nqgurevich

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Commits on Sep 16, 2024

• Updates to benchmarking tutorial

  

  Natasha Gurevich

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