SDC-BIDS-sMRI v1.0.0

SDC-BIDS-sMRI v1.0.0: initial release.

Summary of changes:

• Initial release: all commits since the beginning of the development.

Last release prior to transitioning to the new Carpentries Workbench
infrastructure.

What's Changed

• Quantification episode intro and skeleton by @neurorepro in #1
• Add tissue segmentation and visualization by @neurorepro in #2
• Update introduction and add second part of the quantification episode by @neurorepro in #4
• 5_statistical analysis_1 by @devdinie in #3
• Lesson 1 and 2 notebooks added by @nikhil153 in #5
• added spatial normalization notebook by @nikhil153 in #6
• @devdinie 5_episode520_visualization_Examples1 by @devdinie in #7
• Update all but last section to be finished by @neurorepro in #8
• Add some minor changes by @neurorepro in #9
• Added reproducibility notebook and related data by @nikhil153 in #10
• All but final FS stats for episode 4. Add notebook. by @neurorepro in #11
• Move notebook to the right folder by @neurorepro in #12
• updated index.md by @nikhil153 in #13
• updated 01_episode with python snippets by @nikhil153 in #14
• removed VBM sections by @nikhil153 in #15
• updated episode 2 with python snippets by @nikhil153 in #16
• updated episode 3 with more images and snippets by @nikhil153 in #17
• updated setup.md by @nikhil153 in #18
• Updated episode 3 by @nikhil153 in #22
• 5_Update_statistical_analysis by @devdinie in #19
• 5_Updating preprocessing for VBM - complete by @devdinie in #23
• 5_ update formatting and correcting errors from last merge by @devdinie in #25
• 5_ updating broken link & mialigned fig by @devdinie in #26
• Updateed QC and reproducibility lessons by @nikhil153 in #27
• file and directory renaming to be consistent by @nikhil153 in #28
• more renaming and update to course_flow figure by @nikhil153 in #29
• fixed paths in statistical analysis by @nikhil153 in #30
• fixed README lesson titles by @nikhil153 in #31
• fixed episode names in headers by @nikhil153 in #32
• added local data by @nikhil153 in #35
• Add subject examplar by @neurorepro in #36
• completed cortical thickness analysis with AOMIC data by @nikhil153 in #37
• Changed notebooks to use test subjects from AOMIC by @nikhil153 in #38
• Changed notebooks to use test subjects from AOMIC by @nikhil153 in #39
• updated episode 1 with mprage info by @nikhil153 in #40
• minor changes to notebooks by @nikhil153 in #41
• Add initial changes of quantification episode. Add fmriprep derivatives. by @neurorepro in #42
• added fMRIPrep example and more BIDS info in notebooks by @nikhil153 in #44
• Iquant by @neurorepro in #43
• updated course flow images to match name changes by @nikhil153 in #45
• fixed bunch of typos by @nikhil153 in #46
• Iquant by @neurorepro in #47
• Clean both superfluous notebooks and data. Add minor changes to both … by @neurorepro in #48
• added pybids by @nikhil153 in #49
• Iquant by @neurorepro in #50
• minor changes to figures by @nikhil153 in #51
• Add cortical thickness stat analysis by @neurorepro in #52
• Add remaining content of stat episode and code by @neurorepro in #53
• Add tree to binder by @neurorepro in #54
• Fix typo. Add solution to challenge. by @neurorepro in #55
• Iquant by @neurorepro in #56
• Update README.md by @jbpoline in #57
• Updated email by @nikhil153 in #60
• urgent: fix workflows by @zkamvar in #58

New Contributors

• @neurorepro made their first contribution in #1
• @devdinie made their first contribution in #3
• @nikhil153 made their first contribution in #5
• @jbpoline made their first contribution in #57
• @zkamvar made their first contribution in #58

Full Changelog: https://github.com/carpentries-incubator/SDC-BIDS-sMRI/commits/v1.0.0