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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,97 @@ | ||
| name: 'Prepare Datasets' | ||
| description: 'Restores data from caches or downloads it from S3.' | ||
| inputs: | ||
| aws-access-key-id: | ||
| description: 'AWS Access Key ID' | ||
| required: true | ||
| aws-secret-access-key: | ||
| description: 'AWS Secret Access Key' | ||
| required: true | ||
| s3-gin-bucket: | ||
| description: 'S3 GIN Bucket URL' | ||
| required: true | ||
| os: | ||
| description: 'Operating system' | ||
| required: true | ||
| runs: | ||
| using: 'composite' | ||
| steps: | ||
| - name: Get ephy_testing_data current head hash | ||
| id: ephys | ||
| shell: bash | ||
| run: | | ||
| HASH=$(git ls-remote https://gin.g-node.org/NeuralEnsemble/ephy_testing_data.git HEAD | cut -f1) | ||
| echo "HASH_EPHY_DATASET=$HASH" >> $GITHUB_OUTPUT | ||
| - name: Cache ephys dataset | ||
| uses: actions/cache@v4 | ||
| id: cache-ephys-datasets | ||
| with: | ||
| path: ./ephy_testing_data | ||
| key: ephys-datasets-${{ inputs.os }}-${{ steps.ephys.outputs.HASH_EPHY_DATASET }} | ||
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|
||
| - name: Get ophys_testing_data current head hash | ||
| id: ophys | ||
| shell: bash | ||
| run: | | ||
| HASH=$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1) | ||
| echo "HASH_OPHYS_DATASET=$HASH" >> $GITHUB_OUTPUT | ||
| - name: Cache ophys dataset | ||
| uses: actions/cache@v4 | ||
| id: cache-ophys-datasets | ||
| with: | ||
| path: ./ophys_testing_data | ||
| key: ophys-datasets-${{ inputs.os }}-${{ steps.ophys.outputs.HASH_OPHYS_DATASET }} | ||
|
|
||
| - name: Get behavior_testing_data current head hash | ||
| id: behavior | ||
| shell: bash | ||
| run: | | ||
| HASH=$(git ls-remote https://gin.g-node.org/CatalystNeuro/behavior_testing_data.git HEAD | cut -f1) | ||
| echo "HASH_BEHAVIOR_DATASET=$HASH" >> $GITHUB_OUTPUT | ||
| - name: Cache behavior dataset | ||
| uses: actions/cache@v4 | ||
| id: cache-behavior-datasets | ||
| with: | ||
| path: ./behavior_testing_data | ||
| key: behavior-datasets-${{ inputs.os }}-${{ steps.behavior.outputs.HASH_BEHAVIOR_DATASET }} | ||
|
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| - name: Determine if downloads are required | ||
| id: download-check | ||
| shell: bash # Added shell property | ||
| run: | | ||
| if [[ "${{ steps.cache-ephys-datasets.outputs.cache-hit }}" != 'true' || \ | ||
| "${{ steps.cache-ophys-datasets.outputs.cache-hit }}" != 'true' || \ | ||
| "${{ steps.cache-behavior-datasets.outputs.cache-hit }}" != 'true' ]]; then | ||
| echo "DOWNLOAD_REQUIRED=true" >> $GITHUB_OUTPUT | ||
| else | ||
| echo "DOWNLOAD_REQUIRED=false" >> $GITHUB_OUTPUT | ||
| fi | ||
| - if: ${{ steps.download-check.outputs.DOWNLOAD_REQUIRED == 'true' }} | ||
| name: Install and configure AWS CLI | ||
| shell: bash | ||
| run: | | ||
| pip install awscli | ||
| aws configure set aws_access_key_id "${{ inputs.aws-access-key-id }}" | ||
| aws configure set aws_secret_access_key "${{ inputs.aws-secret-access-key }}" | ||
| - if: ${{ steps.cache-ephys-datasets.outputs.cache-hit != 'true' }} | ||
| name: Download ephys dataset from S3 | ||
| shell: bash | ||
| run: | | ||
| aws s3 cp --recursive "${{ inputs.s3-gin-bucket }}/ephy_testing_data" ./ephy_testing_data | ||
| - if: ${{ steps.cache-ophys-datasets.outputs.cache-hit != 'true' }} | ||
| name: Download ophys dataset from S3 | ||
| shell: bash | ||
| run: | | ||
| aws s3 cp --recursive "${{ inputs.s3-gin-bucket }}/ophys_testing_data" ./ophys_testing_data | ||
| - if: ${{ steps.cache-behavior-datasets.outputs.cache-hit != 'true' }} | ||
| name: Download behavior dataset from S3 | ||
| shell: bash | ||
| run: | | ||
| aws s3 cp --recursive "${{ inputs.s3-gin-bucket }}/behavior_testing_data" ./behavior_testing_data |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| ["ubuntu-latest", "macos-latest", "windows-latest", "macos-13"] |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| ["3.9", "3.10", "3.11", "3.12"] |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -15,14 +15,14 @@ jobs: | |
| - name: Set up Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: "3.10" | ||
| - name: Install dependencies | ||
| python-version: "3.11" | ||
| - name: Install Building Dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| pip install wheel | ||
| python -m pip install --upgrade build | ||
| - name: Build package | ||
| run: | | ||
| python setup.py sdist bdist_wheel | ||
| python -m build | ||
| - name: pypi-publish | ||
| uses: pypa/[email protected] | ||
| with: | ||
|
|
||
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8 changes: 6 additions & 2 deletions
8
.github/workflows/build_and_upload_docker_image_rclone_with_config.yml
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