Update to use new version of predector utils

ccdmb · Aug 30, 2024 · 745b1d6 · 745b1d6
1 parent b3e4700
commit 745b1d6
Show file tree

Hide file tree

Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/environment.yml b/environment.yml
@@ -19,7 +19,7 @@ dependencies:
   - predector::effectorp3=3.0=py_2
   - predector::localizer=1.0.4
   - predector::phobius=1.01=5
-  - predector::predectorutils=0.9.1
+  - predector::predectorutils=0.9.2
   - predector::signalp3=3.0b=3
   - predector::signalp4=4.1g=3
   - predector::signalp5=5.0b

diff --git a/nextflow.config b/nextflow.config
@@ -64,8 +64,8 @@ params {
     dbcan_targets = "${baseDir}/data/dbcan_targets.txt"
     private_phibase_version = "v4-17"
     // The PHI-base team often rename files. Best to get a release from a commit rather than master.
-    private_phibase_url = "https://github.com/PHI-base/data/blob/38c9034d754482986f2f9f73b3b46d5bb7da1615/releases/phi-base_v4-17_2024-05-01.fas"
-    private_dbcan_version = "V13"
+    private_phibase_url = "https://raw.githubusercontent.com/PHI-base/data/08895a81b0bfde0ba682c5b61742f5b89e186105/releases/phi-base_v4-17_2024-05-01.fas"
+    private_dbcan_version = "V13"
     private_dbcan_url = "https://bcb.unl.edu/dbCAN2/download/dbCAN-HMMdb-V13.txt"
     private_effectordb_url = "https://figshare.com/ndownloader/files/31397770"
     private_effectordb_version = "1"
@@ -78,6 +78,8 @@ includeConfig "${baseDir}/conf/c4.config"
 includeConfig "${baseDir}/conf/r8.config"
 
 process.container = "predector/predector:${manifest.version}"
+report.overwrite = true
+timeline.overwrite = true
 
 profiles {
     docker {