1.2.8-alpha
Pre-release
A DEVELOPMENT RELEASE. Use at your own risk.
This is for me to test the pipeline in numerous environments so that I can track down the SignalP issue described in #92, and #93.
What's Changed
We've removed Pfamscan as Pfam seems to be undergoing some changes and the old pfamscan script doesn't always work.
I have plans to enable integration of interproscan results shortly.
Fixes a bug causing only a subset of PHI-base searches to be run.
Updated the installation and links in documentation for Phobius as the source has moved (thanks to @markusHaferkamp for reporting this).
Updated installer to use SignalP 6.0h.
Improved error reporting for SignalP 3 and 4. These programs sometimes fail silently, causing cryptic errors down the road about Dmatrix types in xgboost.
I still haven't been able to reproduce the segfaults observed by some people, so i can't find the cause.
But this will at least be clearer as to what's going on.
Related to signalp3. The Dmatrix datatypes are now explicitly set, so even if SignalP3 doesn't give any results you'll be able to get some ranked outputs.
Full Changelog: 1.2.7...1.2.8-alpha
