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Update scripts to use JEDI skylab v7 (ufs-community#92)
* change yaml for skylab_v7 * add missing change * remove unnecessary landdadir * remove fv3bundle_vn from scripts * remove fv3bundle from test scripts * add err_chk to exscripts * add ush directory * add missing change * change impi ver name * change path to gfs-land * increse time limit for forecast on orion * change path to input data dir for fake files * change indentation * fix typo * Add apply_incr directly to sorc * change file name for era5 in obs task * fix ctest issues * remove -x from test_vector2tile * update PR template * add missing change in ex-script * change homelandda/parm to parmlandda
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,55 @@ | ||
| - obs space: | ||
| name: SnowDepthGHCN | ||
| distribution: | ||
| name: Halo | ||
| halo size: 250e3 | ||
| simulated variables: [totalSnowDepth] | ||
| obsdatain: | ||
| engine: | ||
| type: H5File | ||
| obsfile: GHCN_XXYYYYXXMMXXDDXXHH.nc | ||
| obsdataout: | ||
| engine: | ||
| type: H5File | ||
| obsfile: output/DA/hofx/letkf_hofx_ghcn_XXYYYYXXMMXXDDXXHH.nc | ||
| obs operator: | ||
| name: Identity | ||
| obs error: | ||
| covariance model: diagonal | ||
| obs localizations: | ||
| - localization method: Horizontal SOAR | ||
| lengthscale: 250e3 | ||
| soar horizontal decay: 0.000021 | ||
| max nobs: 50 | ||
| - localization method: Vertical Brasnett | ||
| vertical lengthscale: 700 | ||
| obs filters: | ||
| - filter: Bounds Check # negative / missing snow | ||
| filter variables: | ||
| - name: totalSnowDepth | ||
| minvalue: 0.0 | ||
| maxvalue: 10000.0 | ||
| - filter: Domain Check # missing station elevation (-999.9) | ||
| where: | ||
| - variable: | ||
| name: MetaData/stationElevation | ||
| minvalue: -999.0 | ||
| maxvalue: 10000.0 | ||
| - filter: Domain Check # land only | ||
| where: | ||
| - variable: | ||
| name: GeoVaLs/slmsk | ||
| minvalue: 0.5 | ||
| maxvalue: 1.5 | ||
| - filter: RejectList # no land-ice | ||
| where: | ||
| - variable: | ||
| name: GeoVaLs/vtype | ||
| minvalue: 14.5 | ||
| maxvalue: 15.5 | ||
| - filter: Background Check # gross error check | ||
| filter variables: | ||
| - name: totalSnowDepth | ||
| threshold: 6.25 | ||
| action: | ||
| name: reject |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,10 @@ | ||
| field metadata: | ||
|
|
||
| - long name: slmsk | ||
| interpolation type: nearest | ||
|
|
||
| - long name: totalSnowDepth | ||
| interpolation type: nearest | ||
|
|
||
| - long name: vtype | ||
| interpolation type: nearest |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,58 @@ | ||
| geometry: | ||
| fms initialization: | ||
| namelist filename: Data/fv3files/fmsmpp.nml | ||
| field table filename: Data/fv3files/field_table | ||
| akbk: Data/fv3files/akbk64.nc4 | ||
| npx: XXREP | ||
| npy: XXREP | ||
| npz: 64 | ||
| field metadata override: gfs-land.yaml | ||
| time invariant fields: | ||
| state fields: | ||
| datetime: XXYYYP-XXMP-XXDPTXXHP:00:00Z | ||
| filetype: fms restart | ||
| skip coupler file: true | ||
| state variables: [orog_filt] | ||
| datapath: XXTPATH | ||
| filename_orog: XXTSTUB.nc | ||
| derived fields: [nominal_surface_pressure] | ||
|
|
||
| time window: | ||
| begin: XXYYYP-XXMP-XXDPTXXHP:00:00Z | ||
| length: PT24H | ||
|
|
||
| background: | ||
| date: &date XXYYYY-XXMM-XXDDTXXHH:00:00Z | ||
| members: | ||
| - datetime: XXYYYY-XXMM-XXDDTXXHH:00:00Z | ||
| filetype: fms restart | ||
| state variables: [snwdph,vtype,slmsk] | ||
| datapath: mem_pos/ | ||
| filename_sfcd: XXYYYYXXMMXXDD.XXHH0000.sfc_data.nc | ||
| filename_cplr: XXYYYYXXMMXXDD.XXHH0000.coupler.res | ||
| - datetime: XXYYYY-XXMM-XXDDTXXHH:00:00Z | ||
| filetype: fms restart | ||
| state variables: [snwdph,vtype,slmsk] | ||
| datapath: mem_neg/ | ||
| filename_sfcd: XXYYYYXXMMXXDD.XXHH0000.sfc_data.nc | ||
| filename_cplr: XXYYYYXXMMXXDD.XXHH0000.coupler.res | ||
|
|
||
| driver: | ||
| save posterior mean: false | ||
| save posterior mean increment: true | ||
| save posterior ensemble: false | ||
| run as observer only: XXHOFX | ||
|
|
||
| local ensemble DA: | ||
| solver: LETKF | ||
| inflation: | ||
| rtps: 0.0 | ||
| rtpp: 0.0 | ||
| mult: 1.0 | ||
|
|
||
| output increment: | ||
| filetype: fms restart | ||
| filename_sfcd: xainc.sfc_data.nc | ||
|
|
||
| observations: | ||
| observers: |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,4 @@ | ||
| 2 (Calendar: no_calendar=0, thirty_day_months=1, julian=2, gregorian=3, noleap=4) | ||
| XXYYYP XXMP XXDP XXHP 0 0 Model start time: year, month, day, hour, minute, second | ||
| XXYYYY XXMM XXDD XXHH 0 0 Current model time: year, month, day, hour, minute, second | ||
|
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