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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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@@ -7,36 +7,77 @@ on: | |
| delete: | ||
| branches: | ||
| - 'dev-*' | ||
| pull_request: | ||
| types: [labeled, unlabeled, synchronize, closed] | ||
|
|
||
| # https://docs.github.com/en/actions/deployment/security-hardening-your-deployments/configuring-openid-connect-in-amazon-web-services | ||
| permissions: | ||
| id-token: write | ||
| contents: read | ||
| id-token: write | ||
| pull-requests: write | ||
|
|
||
| jobs: | ||
| deploy-to-dev: | ||
| name: deploy dev branch | ||
| runs-on: ubuntu-latest | ||
| environment: dev | ||
| if: github.repository == 'chanzuckerberg/cryoet-data-portal' | ||
| if: | | ||
| github.repository == 'chanzuckerberg/cryoet-data-portal' && ( | ||
| github.event_name != 'pull_request' || ( | ||
| startsWith(github.head_ref, 'dev-') != true && ( | ||
| contains(github.event.pull_request.labels.*.name, 'preview') || ( | ||
| github.event.action == 'unlabeled' && | ||
| github.event.label.name == 'preview' | ||
| ) | ||
| ) | ||
| ) | ||
| ) | ||
| steps: | ||
| - name: Checkout Repo | ||
| uses: actions/checkout@v4 | ||
|
|
||
| - id: deploy-data | ||
| name: get stack name | ||
| uses: actions/github-script@v7 | ||
| with: | ||
| result-encoding: string | ||
| script: | | ||
| const event = ${{ toJson(github.event) }} | ||
| const eventName = '${{ github.event_name }}' | ||
| let name = '' | ||
| switch (eventName) { | ||
| case 'pull_request': { | ||
| name = event.pull_request.head.ref | ||
| break | ||
| } | ||
| default: { | ||
| name = event.ref.replace('refs/heads/', '') | ||
| break | ||
| } | ||
| } | ||
| return name.replaceAll('/', '-').slice(0, 25) | ||
| - name: Configure AWS Credentials | ||
| uses: aws-actions/configure-aws-credentials@v4 | ||
| with: | ||
| mask-aws-account-id: true | ||
| aws-region: ${{ secrets.AWS_REGION }} | ||
| role-to-assume: ${{ secrets.AWS_ROLE_TO_ASSUME }} | ||
| role-duration-seconds: 1200 | ||
| - name: Setting up stack name | ||
| run: | | ||
| if [[ ${#GITHUB_REF_NAME} -gt 25 ]]; then | ||
| echo "branch name: ${GITHUB_REF_NAME}, length ${#GITHUB_REF_NAME}, is $((${#GITHUB_REF_NAME} - 25)) characters too long, please use a branch name that's 25 characters or shorter" | ||
| exit 1 | ||
| else | ||
| echo $GITHUB_REF_NAME | tr '[:upper:]' '[:lower:]' | xargs -I {} -n 1 echo STACK_NAME={} >> $GITHUB_ENV | ||
| fi | ||
|
|
||
| - name: Create or update dev stack | ||
| if: ${{ github.event_name == 'push' }} | ||
| if: | | ||
| github.event_name == 'push' || ( | ||
| github.event_name == 'pull_request' && ( | ||
| github.event.action == 'labeled' || | ||
| github.event.action == 'synchronize' | ||
| ) | ||
| ) | ||
| uses: chanzuckerberg/github-actions/.github/actions/[email protected] | ||
| env: | ||
| # Force using BuildKit instead of normal Docker, required so that metadata | ||
|
|
@@ -46,31 +87,103 @@ jobs: | |
| DOCKER_REPO: ${{ secrets.ECR_REPO }}/ | ||
| ENV: dev | ||
| with: | ||
| stack-name: ${{ env.STACK_NAME }} | ||
| stack-name: ${{ steps.deploy-data.outputs.result }} | ||
| create-tag: true | ||
| tfe-token: ${{ secrets.TFE_TOKEN }} | ||
| working-directory: ./frontend | ||
| env: dev | ||
| operation: create-or-update | ||
|
|
||
| - name: Annotate workflow run with frontend URL | ||
| if: ${{ github.event_name == 'push' }} && success() | ||
| if: | | ||
| github.event_name == 'push' || ( | ||
| github.event_name == 'pull_request' && ( | ||
| github.event.action == 'labeled' || | ||
| github.event.action == 'synchronize' | ||
| ) | ||
| ) | ||
| run: | | ||
| echo "# Frontend URL:" >> $GITHUB_STEP_SUMMARY | ||
| echo >> $GITHUB_STEP_SUMMARY | ||
| echo "https://${{ env.STACK_NAME }}.cryoet.dev.si.czi.technology" >> $GITHUB_STEP_SUMMARY | ||
| echo "https://${{ steps.deploy-data.outputs.result }}.cryoet.dev.si.czi.technology" >> $GITHUB_STEP_SUMMARY | ||
| - id: find-comment | ||
| name: Find PR comment | ||
| if: github.event_name == 'pull_request' | ||
| uses: peter-evans/find-comment@v3 | ||
| with: | ||
| issue-number: ${{ github.event.pull_request.number }} | ||
| body-includes: 'Frontend Preview URL' | ||
|
|
||
| - id: get-comment-date | ||
| name: Get PR comment updated date | ||
| if: github.event_name == 'pull_request' | ||
| uses: actions/github-script@v7 | ||
| with: | ||
| result-encoding: string | ||
| script: | | ||
| const date = new Date() | ||
| const options = { | ||
| month: '2-digit', | ||
| day: '2-digit', | ||
| year: '2-digit', | ||
| hour: '2-digit', | ||
| minute: '2-digit', | ||
| second: '2-digit', | ||
| hour12: true, | ||
| }; | ||
| const pstDate = date.toLocaleString('en-US', { timeZone: 'America/Los_Angeles', ...options }); | ||
| return pstDate.replace(',', ' @'); | ||
| - name: Post comment on PR | ||
| if: | | ||
| github.event_name == 'pull_request' && ( | ||
| github.event.action == 'labeled' || | ||
| github.event.action == 'synchronize' | ||
| ) | ||
| uses: peter-evans/create-or-update-comment@v4 | ||
| with: | ||
| comment-id: ${{ steps.find-comment.outputs.comment-id}} | ||
| issue-number: ${{ github.event.pull_request.number}} | ||
| edit-mode: replace | ||
| body: | | ||
| # Frontend Preview URL | ||
| https://${{ steps.deploy-data.outputs.result }}.cryoet.dev.si.czi.technology | ||
| Updated: ${{ steps.get-comment-date.outputs.result }} PST | ||
| - name: Delete PR comment | ||
| if: | | ||
| github.event_name == 'pull_request' && ( | ||
| github.event.action == 'unlabeled' || | ||
| github.event.action == 'closed' | ||
| ) && | ||
| steps.find-comment.outputs.comment-id != '' | ||
| uses: actions/github-script@v7 | ||
| with: | ||
| script: | | ||
| github.rest.issues.deleteComment({ | ||
| comment_id: ${{ steps.find-comment.outputs.comment-id }}, | ||
| owner: context.repo.owner, | ||
| repo: context.repo.repo, | ||
| }) | ||
| - name: Delete dev set up stack name | ||
| if: ${{ github.event_name == 'delete' && startsWith(github.event.ref, 'dev-') }} | ||
| run: | | ||
| echo ${{ github.event.ref }} | tr '[:upper:]' '[:lower:]' | xargs -I {} -n 1 echo DELETE_STACK_NAME={} >> $GITHUB_ENV | ||
| - name: Delete dev | ||
| if: ${{ github.event_name == 'delete' && startsWith(github.event.ref, 'dev-') }} | ||
| if: | | ||
| github.event_name == 'delete' || ( | ||
| github.event_name == 'pull_request' && ( | ||
| github.event.action == 'unlabeled' || | ||
| github.event.action == 'closed' | ||
| ) | ||
| ) | ||
| uses: chanzuckerberg/github-actions/.github/actions/[email protected] | ||
| env: | ||
| ENV: dev | ||
| with: | ||
| stack-name: ${{ env.DELETE_STACK_NAME }} | ||
| stack-name: ${{ steps.deploy-data.outputs.result }} | ||
| operation: delete | ||
| tfe-token: ${{ secrets.TFE_TOKEN }} | ||
| env: dev | ||
|
|
||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -137,6 +137,7 @@ dmypy.json | |
|
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| .idea | ||
| .terraform | ||
| .DS_Store | ||
|
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| # Files specific to this repo | ||
| webdav_settings.json | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta" | |
|
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| [project] | ||
| name = "cryoet_data_portal" | ||
| version = "4.2.1" | ||
| version = "4.3.0" | ||
| description = "API Client to facilitate the use of the CryoET Portal. For more information about the API and the project visit https://github.com/chanzuckerberg/cryoet-data-portal/" | ||
| authors = [ | ||
| { name = "Chan Zuckerberg Initiative", email = "[email protected]" }, | ||
|
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||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -30,7 +30,7 @@ | |
| TomogramVoxelSpacing, | ||
| ) | ||
|
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| __version__ = "4.2.1" | ||
| __version__ = "4.3.0" | ||
|
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| __all__ = [ | ||
| "Client", | ||
|
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||
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