Work around a packaging issue in biopython. #64
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atolopko-czi
approved these changes
Jun 27, 2024
| @@ -29,6 +29,7 @@ httpx = "^0.24.1" | |||
| [tool.poetry.dependencies] | |||
| python = "^3.12" | |||
| fastapi = "^0.110.0" | |||
| biopython = { git = "https://github.com/biopython/biopython.git", rev = "e0731edc892b653dee10b1f68acf795086e6f3f0" } | |||
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maybe add a comment or TODO here as why ^1.82 version failed and to upgrade when next build is available.
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I'm not entirely clear on the failure path (specifically, why this EVER worked), but biopython was unable to be built in linux containers on ARM macs, due to some sort of python packaging quirks.
This upstream PR fixed the issue: biopython/biopython#4749
I updated biopython to use the latest git SHA for biopython for now. We can change it back to an official release once they create a new one.