feat: update ir-spectrum and add more filters

eslint.config.mjs

@@ -0,0 +1,12 @@
+import cheminfo from 'eslint-config-cheminfo';
+
+export default [
+  ...cheminfo,
+  {
+    languageOptions: {
+      globals: {
+        __dirname: 'readonly',
+      },
+    },
+  },
+];

package.json

@@ -16,9 +16,9 @@
     "prepack": "rollup -c",
     "prettier": "prettier --check src",
     "prettier-write": "prettier --write src",
-    "test": "npm run test-coverage && npm run eslint",
-    "test-coverage": "jest --coverage",
-    "test-only": "jest"
+    "test": "npm run test-coverage && npm run eslint && npm run prettier",
+    "test-coverage": "vitest run --coverage",
+    "test-only": "viest run"
   },
   "repository": {
     "type": "git",
@@ -35,22 +35,23 @@
     "testEnvironment": "node"
   },
   "devDependencies": {
-    "@babel/plugin-transform-modules-commonjs": "^7.22.5",
-    "@types/jest": "^29.5.3",
+    "@babel/plugin-transform-modules-commonjs": "^7.25.9",
+    "@vitest/coverage-v8": "^2.1.5",
     "cheminfo-build": "^1.2.0",
     "codecov": "^3.8.3",
-    "eslint": "^8.47.0",
-    "eslint-config-cheminfo": "^9.0.2",
+    "eslint": "^9.14.0",
+    "eslint-config-cheminfo": "^12.0.1",
     "esm": "^3.2.25",
-    "jest": "^29.6.3",
     "jest-matcher-deep-close-to": "^3.0.2",
-    "prettier": "^3.0.2",
-    "rollup": "^3.28.1"
+    "prettier": "^3.3.3",
+    "rollup": "^4.26.0",
+    "vitest": "^2.1.5"
   },
   "dependencies": {
-    "common-spectrum": "2.2.1",
-    "ml-gsd": "^12.1.3",
-    "spc-parser": "^0.7.2"
+    "common-spectrum": "2.12.0",
+    "ml-gsd": "^12.1.8",
+    "spc-parser": "^1.0.0",
+    "uninstall": "^0.0.0"
   },
   "info": {
     "logo": "https://raw.githubusercontent.com/cheminfo/font/master/src/ir/assignment.svg",

src/__tests__/index.test.js

@@ -1,7 +1,8 @@
-import { readFileSync } from 'fs';
-import { join } from 'path';
+import { readFileSync } from 'node:fs';
+import { join } from 'node:path';
 
 import { toBeDeepCloseTo, toMatchCloseTo } from 'jest-matcher-deep-close-to';
+import { test, expect } from 'vitest';
 
 import { fromJcamp, autoPeakPicking, peakPicking } from '..';
 

src/from/__tests__/fromJcamp.test.js

@@ -1,7 +1,8 @@
-import { readFileSync } from 'fs';
-import { join } from 'path';
+import { readFileSync } from 'node:fs';
+import { join } from 'node:path';
 
 import { toBeDeepCloseTo, toMatchCloseTo } from 'jest-matcher-deep-close-to';
+import { describe, it, expect } from 'vitest';
 
 import { fromJcamp } from '../fromJcamp';
 

src/from/__tests__/fromSPC.test.js

@@ -1,8 +1,9 @@
-import { readFileSync } from 'fs';
-import { join } from 'path';
+import { readFileSync } from 'node:fs';
+import { join } from 'node:path';
 
 import { toJcamp } from 'common-spectrum';
 import { toBeDeepCloseTo, toMatchCloseTo } from 'jest-matcher-deep-close-to';
+import { describe, it, expect } from 'vitest';
 
 import { fromSPC } from '../fromSPC';
 

src/from/fromJcamp.js

@@ -7,9 +7,9 @@ import { spectrumCallback } from './utils/spectrumCallback';
  * @param {ArrayBuffer|string} jcamp
  * @param {object} [options={}]
  * @param {string|number} [options.id=Math.random()]
- * @param {string} [options.label=options.id] human redeable label
- * @param {string} [options.spectrumCallback] a callback to apply on variables when creating spectrum. Default will add a and t
- * @return {Analysis} - New class element with the given data
+ * @param {string} [options.label=options.id] - human redeable label
+ * @param {string} [options.spectrumCallback] - a callback to apply on variables when creating spectrum. Default will add a and t
+ * @returns {Analysis} - New class element with the given data
  */
 export function fromJcamp(jcamp, options = {}) {
   return commonFromJcamp(jcamp, { ...options, spectrumCallback });

src/from/fromSPC.js

@@ -8,9 +8,9 @@ import { spectrumCallback } from './utils/spectrumCallback';
  * @param {ArrayBuffer} buffer
  * @param {object} [options={}]
  * @param {object} [options.id=Math.random()]
- * @param {string} [options.label=options.id] human redeable label
- * @param {string} [options.spectrumCallback] a callback to apply on variables when creating spectrum. Default will add a and t
- * @return {Analysis} - New class element with the given data
+ * @param {string} [options.label=options.id] - human redeable label
+ * @param {string} [options.spectrumCallback] - a callback to apply on variables when creating spectrum. Default will add a and t
+ * @returns {Analysis} - New class element with the given data
  */
 
 export function fromSPC(buffer, options = {}) {

src/jsgraph/getAnnotations.js

@@ -1,5 +1,5 @@
 /**
- * @typedef {Object} Peak
+ * @typedef {object} Peak
  * @property {number} wavenumber
  * @property {number} transmittance
  * @property {number} absorbance
@@ -9,14 +9,14 @@
 
 /**
  * Creates annotations for jsgraph that allows to display the result of peak picking
- * @param {array<Peak>} peaks
+ * @param {Array<Peak>} peaks
  * @param {object} [options={}]
  * @param {string} [options.fillColor='green']
  * @param {string} [options.strokeColor='red']
- * @param {string} [options.showKind=true] Display the kind, 'm', 'w', 'S'
- * @param {string} [options.showAssignment=true] Display the assignment
- * @param {function} [options.createFct] (annotation, peak) => {}: callback allowing to add properties
- * @param {string} [options.mode='t100'] 't100'=transmittance in %, 't'=transmittance, 'a'=absorbance
+ * @param {string} [options.showKind=true] - Display the kind, 'm', 'w', 'S'
+ * @param {string} [options.showAssignment=true] - Display the assignment
+ * @param {Function} [options.createFct] - (annotation, peak) => {}: callback allowing to add properties
+ * @param {string} [options.mode='t100'] - 't100'=transmittance in %, 't'=transmittance, 'a'=absorbance
  * @returns array
  */